Browse Element(s) Details


Os.55334.1.S1_at

Description gb:AK107889.1
DB_XREF= gi:32993098
TID=Os.55334.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E04, full insert sequence.
FL= gb:AK107889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0352011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03484OsAffx.7468.1.S1_at11/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03484Os.11241.1.S1_at8/1111+1334134..1343979MatE family protein, expressed
LOC_Os11g03500Os.52496.1.S1_at2/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03500Os.11241.1.S1_at1/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03510Os.23290.2.S1_s_at11/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03510OsAffx.30797.1.S1_at9/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03520Os.55334.1.S1_at11/1111+1358246..1359545GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g03530Os.5915.1.S1_at11/1111+1359727..1363128phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g03540Os.16683.1.S1_at2/1111+1363704..1368690AP2 domain containing protein, expressed
LOC_Os11g03550OsAffx.31562.2.S1_s_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03550OsAffx.31562.1.S1_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03560OsAffx.31563.1.S1_at11/1111+1379713..1380036hypothetical protein
LOC_Os11g03570Os.27524.1.S1_at10/1111+1380840..1388477expressed protein
LOC_Os11g03570Os.27524.2.S1_x_at5/1111+1380840..1388477expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55334.1.S1_at--562--4311Chr11:1358536..1358647 (25 bp)
CCATCCCGCCAGATACGGATTTGAT
LOC_Os11g03520
Os.55334.1.S1_at--850--5291Chr11:1358452..1358476 (25 bp)
GAAGGAGATGGTGTGTCCCACCCCG
LOC_Os11g03520
Os.55334.1.S1_at--969--3351Chr11:1358434..1358458 (25 bp)
CACCCCGCAGAGACACGTGTGGTGG
LOC_Os11g03520
Os.55334.1.S1_at--83--1912Chr12:1262620..1262644 (25 bp)
ACGTGTGGTGGGACCTGTATAGCCC
NONE
Os.55334.1.S1_at--442--8751Chr11:1358405..1358429 (25 bp)
TGTATAGCCCCACTGAGGTAGTCAC
LOC_Os11g03520
Os.55334.1.S1_at--701--2192Chr12:1262570..1262593 (24 bp)
ACAAACTGGTCGTGGTCAGCGCCAT
NONE
Os.55334.1.S1_at--884--8712Chr12:1262525..1262549 (25 bp)
TGTCGTCCCATCACCTTGGAGATGT
NONE
Os.55334.1.S1_at--807--10831Chr11:1358310..1358334 (25 bp)
TTGGAGATGTTGACCGGCCATATAT
LOC_Os11g03520
Os.55334.1.S1_at--866--8431Chr11:1358295..1358319 (25 bp)
GGCCATATATCCCTAATTTCTCCTA
LOC_Os11g03520
Os.55334.1.S1_at--586--3111Chr11:1358281..1358305 (25 bp)
AATTTCTCCTAGTATGTTCTAACTT
LOC_Os11g03520
Os.55334.1.S1_at--901--6671Chr11:1358266..1358290 (25 bp)
GTTCTAACTTTAGCTACCAATCTGT
LOC_Os11g03520
Target Sequence 
CCATCCCGCCAGATACGGATTTGATGAGACGAGGAAGGCGTGCTGTGGGCTGGGCCCATTCGGGGGTACGGTGGGGTGCT
TGACGAAGGAGATGGTGTGTCCCACCCCGCAGAGACACGTGTGGTGGGACCTGTATAGCCCCACTGAGGTAGTCACCTCC
CTCCTCACAAACTGGTCGTGGTCAGCGCCATCTCATTCCAACACCACCATCTGTCGTCCCATCACCTTGGAGATGTTGAC
CGGCCATATATCCCTAATTTCTCCTAGTATGTTCTAACTTTAGCTACCAATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis