Browse Element(s) Details


OsAffx.31562.2.S1_s_at

Description tigr:9640.m00244
TID=OsAffx.31562.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0355011/11hypothetical protein
LOC_Os12g0332011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03500Os.52496.1.S1_at2/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03500Os.11241.1.S1_at1/1111+1347039..1351398MATE efflux family protein, expressed
LOC_Os11g03510Os.23290.2.S1_s_at11/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03510OsAffx.30797.1.S1_at9/1111+1356279..13580331-aminocyclopropane-1-carboxylate oxidase 1, putative
LOC_Os11g03520Os.55334.1.S1_at11/1111+1358246..1359545GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g03530Os.5915.1.S1_at11/1111+1359727..1363128phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g03540Os.16683.1.S1_at2/1111+1363704..1368690AP2 domain containing protein, expressed
LOC_Os11g03550OsAffx.31562.2.S1_s_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03550OsAffx.31562.1.S1_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03560OsAffx.31563.1.S1_at11/1111+1379713..1380036hypothetical protein
LOC_Os11g03570Os.27524.1.S1_at10/1111+1380840..1388477expressed protein
LOC_Os11g03570Os.27524.2.S1_x_at5/1111+1380840..1388477expressed protein
LOC_Os11g03580Os.50919.1.S1_at11/1111+1389587..1390713expressed protein
LOC_Os11g03590Os.50942.1.S1_at11/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03590Os.54382.1.S1_at1/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03600Os.50598.1.S1_at1/1111+1396448..1397278Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31562.2.S1_s_at--44--5392Chr12:1284784..1284808 (25 bp)
GAAGCATTTGGCTGAAGAGGCAATG
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--423--9392Chr12:1284738..1284762 (25 bp)
TCGATCTCGACATTGGATAGCACTG
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--512--6492Chr12:1284723..1284747 (25 bp)
GATAGCACTGATTTCTCATCACTGG
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--210--9532Chr12:1284710..1284734 (25 bp)
TCTCATCACTGGAGGACCCTCAAAT
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--374--9632Chr12:1284681..1284705 (25 bp)
TCAGTTGTGAACATCCCACAAAAGA
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--748--3292Chr12:1284637..1284661 (25 bp)
CAAAGGTGGATCAAGCATTGCAGAA
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--537--6192Chr12:1284201..1284224 (24 bp)
GAGGAATCTGACAACCAAACCCAGT
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--929--2372Chr12:1284185..1284209 (25 bp)
AAACCCAGTGCTCAGTTAGCTTAAC
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--772--1952Chr12:1284162..1284186 (25 bp)
ACTGGATCTGATGTGTCTGGAGGCC
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--868--6292Chr12:1284081..1284105 (25 bp)
GATGATCTCGATGGCTTTGACACAC
LOC_Os12g03320
OsAffx.31562.2.S1_s_at--43--5052Chr12:1284050..1284074 (25 bp)
GCAGAAGTTCTTGTTTCTCCTTCAC
LOC_Os12g03320
Target Sequence 
GAAGCATTTGGCTGAAGAGGCAATGAATTATTTTGAGGAATGTGTATCGATCTCGACATTGGATAGCACTGATTTCTCAT
CACTGGAGGACCCTCAAATAAACTCAGTTGTGAACATCCCACAAAAGAACAGAAATACATCTTTTGACAAAGGTGGATCA
AGCATTGCAGAAACCCACTATCCAACTGATCGTCATTGGCATAATGAGGAATCTGACAACCAAACCCAGTGCTCAGTTAG
CTTAACTGGATCTGATGTGTCTGGAGGCCATACTTATAGTCATACTATGATGACCCCCGTTTCAAGAACTACAAATAGCT
CCAGTGATGATCTCGATGGCTTTGACACACCAAAAGGCAGAAGTTCTTGTTTCTCCTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31562.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis