Browse Element(s) Details


Os.50942.1.S1_at

Description gb:AK059597.1
DB_XREF= gi:32969615
TID=Os.50942.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-E02, full insert sequence.
FL= gb:AK101224.1 gb:AK059597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0359011/11Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os12g033606/11Nse1 non-SMC component of SMC5-6 complex family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03540Os.16683.1.S1_at2/1111+1363704..1368690AP2 domain containing protein, expressed
LOC_Os11g03550OsAffx.31562.2.S1_s_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03550OsAffx.31562.1.S1_at11/1111+1371706..1374653hypothetical protein
LOC_Os11g03560OsAffx.31563.1.S1_at11/1111+1379713..1380036hypothetical protein
LOC_Os11g03570Os.27524.1.S1_at10/1111+1380840..1388477expressed protein
LOC_Os11g03570Os.27524.2.S1_x_at5/1111+1380840..1388477expressed protein
LOC_Os11g03580Os.50919.1.S1_at11/1111+1389587..1390713expressed protein
LOC_Os11g03590Os.50942.1.S1_at11/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03590Os.54382.1.S1_at1/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03600Os.50598.1.S1_at1/1111+1396448..1397278Harpin-induced protein 1 containing protein, expressed
LOC_Os11g03610OsAffx.31564.1.S1_at11/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03610OsAffx.31564.2.S1_at9/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03620Os.52316.1.S1_at10/1111+1404321..1406005expressed protein
LOC_Os11g03620Os.57024.1.S1_at1/1111+1404321..1406005expressed protein
LOC_Os11g03630Os.6369.1.S1_at6/1111+1407946..1409169hypothetical protein
LOC_Os11g03640OsAffx.30800.2.S1_at11/1111+1410111..1412555expressed protein
LOC_Os11g03640OsAffx.30800.2.S1_x_at11/1111+1410111..1412555expressed protein
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50942.1.S1_at--139--2312Chr12:1305575..1305597 (23 bp)
AAAGGCCTCGAGAGCTTGTGGTTGT
LOC_Os12g03360
Os.50942.1.S1_at--215--10832Chr12:1305594..1305618 (25 bp)
TTGTGGTACTGAATGGCCTCGGTTG
LOC_Os12g03360
Os.50942.1.S1_at--217--952Chr12:1305659..1305683 (25 bp)
AGGAAGATCAGGTCCCATCAGCCAA
LOC_Os12g03360
Os.50942.1.S1_at--461--9672Chr12:1305676..1305700 (25 bp)
TCAGCCAACCAGCATTCGAGGACTA
LOC_Os12g03360
Os.50942.1.S1_at--188--3233Chr12:1305814..1305838 (25 bp)
CAAGAGGTGCCATCTGCAGCAGGAC
LOC_Os12g03360
Os.50942.1.S1_at--378--10632Chr12:1305840..1305864 (25 bp)
TTCGCAGTCAACCAGGGCATCTAAG
LOC_Os12g03360
Os.50942.1.S1_at--788--8691Chr11:1393722..1393746 (25 bp)
TGTGCTTGCTAGTGAGATCTCCAGG
LOC_Os11g03590
Os.50942.1.S1_at--496--9232Chr12:1305910..1305933 (24 bp)
TCCAGGTTCCTTTTGTCATGTACAT
NONE
Os.50942.1.S1_at--142--4872Chr12:1305551..1306029 (25 bp)
GCTTTCGGATGCTCTTGTTACTAAC
NONE
Os.50942.1.S1_at--132--5431Chr11:1393885..1393909 (25 bp)
GAAGCCTAATGCTTTCATTTGGCAA
LOC_Os11g03590
Os.50942.1.S1_at--806--2651Chr11:1393913..1393937 (25 bp)
AAGCCTGCTTGTGGCAGCACAGTTA
LOC_Os11g03590
Target Sequence 
AAAGGCCTCGAGAGCTTGTGGTTGTGGTACTGAATGGCCTCGGTTGGAGGGTGAAGATGNCGGTGCTGAGGATGAGGATG
TTAACGAACCTGAGGAAGATCAGGTCCCATCAGCCAACCAGCATTCGAGGACTAGACGCAGAGGTGTCAAATCTGAACTG
GTGGAAGAAAATGAAAGAGCAGGCCCATCAGCGAGGATGACAAGGAGGGCTTTGAGAAGCTCTAAAGCTGAAGCAGTTGA
GGCTGCTCAAGAGGTGCCATCTGCAGCAGGACCTTCGCAGTCAACCAGGGCATCTAAGAGAAGAAAGAACTGATGAGATT
GATCTGTGCTTGCTAGTGAGATCTCCAGGTTCCTTTTGTCATGTACATACAGTAGCAGTAGCCAGTAGGTAATCCTTTTG
AAGTGGCAGGCAAAGTTGCAACTTCTAGTTGGAGAGGAATATATATAGCTTTCGGATGCTCTTGTTACTAACTCTTAGAA
CGTATTAGAAGCCTAATGCTTTCATTTGGCAAAGCAAGCCTGCTTGTGGCAGCACAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis