Browse Element(s) Details


OsAffx.30800.2.S1_at

Description tigr:9639.m00272
TID=OsAffx.30800.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0364011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03570Os.27524.1.S1_at10/1111+1380840..1388477expressed protein
LOC_Os11g03570Os.27524.2.S1_x_at5/1111+1380840..1388477expressed protein
LOC_Os11g03580Os.50919.1.S1_at11/1111+1389587..1390713expressed protein
LOC_Os11g03590Os.50942.1.S1_at11/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03590Os.54382.1.S1_at1/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03600Os.50598.1.S1_at1/1111+1396448..1397278Harpin-induced protein 1 containing protein, expressed
LOC_Os11g03610OsAffx.31564.1.S1_at11/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03610OsAffx.31564.2.S1_at9/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03620Os.52316.1.S1_at10/1111+1404321..1406005expressed protein
LOC_Os11g03620Os.57024.1.S1_at1/1111+1404321..1406005expressed protein
LOC_Os11g03630Os.6369.1.S1_at6/1111+1407946..1409169hypothetical protein
LOC_Os11g03640OsAffx.30800.2.S1_at11/1111+1410111..1412555expressed protein
LOC_Os11g03640OsAffx.30800.2.S1_x_at11/1111+1410111..1412555expressed protein
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03660NANA11+1424901..1425915VQ motif family protein, expressed
LOC_Os11g03670OsAffx.19468.2.S1_at11/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03670OsAffx.19468.1.S1_s_at10/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03680Os.16604.1.S1_at8/1111+1432751..1434200F-box domain containing protein, expressed
LOC_Os11g03690Os.49338.1.S1_at5/1111+1434830..1436704pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30800.2.S1_at--50--3131Chr11:1410757..1410781 (25 bp)
AATTCTGGAATGGATAGTGGTAACC
LOC_Os11g03640
OsAffx.30800.2.S1_at--501--831Chr11:1410748..1410772 (25 bp)
ATGGATAGTGGTAACCAAAATGCTG
LOC_Os11g03640
OsAffx.30800.2.S1_at--654--9631Chr11:1410708..1410732 (25 bp)
TCAGTTTATCTCCTATCCAGAAGTC
LOC_Os11g03640
OsAffx.30800.2.S1_at--948--3431Chr11:1410707..1410731 (25 bp)
CAGTTTATCTCCTATCCAGAAGTCT
LOC_Os11g03640
OsAffx.30800.2.S1_at--856--1191Chr11:1410706..1410730 (25 bp)
AGTTTATCTCCTATCCAGAAGTCTA
LOC_Os11g03640
OsAffx.30800.2.S1_at--922--6811Chr11:1410705..1410729 (25 bp)
GTTTATCTCCTATCCAGAAGTCTAG
LOC_Os11g03640
OsAffx.30800.2.S1_at--447--10351Chr11:1410704..1410728 (25 bp)
TTTATCTCCTATCCAGAAGTCTAGA
LOC_Os11g03640
OsAffx.30800.2.S1_at--363--10431Chr11:1410703..1410727 (25 bp)
TTATCTCCTATCCAGAAGTCTAGAC
LOC_Os11g03640
OsAffx.30800.2.S1_at--64--10151Chr11:1410702..1410726 (25 bp)
TATCTCCTATCCAGAAGTCTAGACA
LOC_Os11g03640
OsAffx.30800.2.S1_at--1075--10511Chr11:1410360..1410384 (25 bp)
TTCAGACTCTGGGACCGGGACACAT
LOC_Os11g03640
OsAffx.30800.2.S1_at--179--9651Chr11:1410359..1410383 (25 bp)
TCAGACTCTGGGACCGGGACACATT
LOC_Os11g03640
Target Sequence 
AATTCTGGAATGGATAGTGGTAACCAAAATGCTGATTTCAGTGATGATATCAGTTTATCTCCTATCCAGAAGTCTAGACA
AAGCACTTTCGAAGCTAAGGAAGCAGTACATGCAGGTATTGAGCAATTAACATCGTGCTCCCCTTACAAGGTAAATAATT
TTGAGGCACATATTGTTGAAGCAGACTCCATTGATGAATTTAACTCATTGTTTAAGTGCCGTATGGAGGAAGTACTAGTG
CAATCCATCTCAGAGTCCAGTATCAGTCAACCCTTGACAGTTAAACTTGAAGATGAATTGAGTGAACCATTATCTTCAGA
CTCTGGGACCGGGACACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30800.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis