Browse Element(s) Details


OsAffx.30801.1.S1_at

Description tigr:9639.m00273
TID=OsAffx.30801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0365011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03580Os.50919.1.S1_at11/1111+1389587..1390713expressed protein
LOC_Os11g03590Os.50942.1.S1_at11/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03590Os.54382.1.S1_at1/1111+1391724..1393980Nse1 non-SMC component of SMC5-6 complex family protein, expressed
LOC_Os11g03600Os.50598.1.S1_at1/1111+1396448..1397278Harpin-induced protein 1 containing protein, expressed
LOC_Os11g03610OsAffx.31564.1.S1_at11/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03610OsAffx.31564.2.S1_at9/1111+1401004..1404134F-box domain containing protein, expressed
LOC_Os11g03620Os.52316.1.S1_at10/1111+1404321..1406005expressed protein
LOC_Os11g03620Os.57024.1.S1_at1/1111+1404321..1406005expressed protein
LOC_Os11g03630Os.6369.1.S1_at6/1111+1407946..1409169hypothetical protein
LOC_Os11g03640OsAffx.30800.2.S1_at11/1111+1410111..1412555expressed protein
LOC_Os11g03640OsAffx.30800.2.S1_x_at11/1111+1410111..1412555expressed protein
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03660NANA11+1424901..1425915VQ motif family protein, expressed
LOC_Os11g03670OsAffx.19468.2.S1_at11/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03670OsAffx.19468.1.S1_s_at10/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03680Os.16604.1.S1_at8/1111+1432751..1434200F-box domain containing protein, expressed
LOC_Os11g03690Os.49338.1.S1_at5/1111+1434830..1436704pentatricopeptide, putative, expressed
LOC_Os11g03700OsAffx.19469.2.S1_x_at11/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03700OsAffx.19469.1.S1_x_at7/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03710Os.23141.1.S1_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03710Os.23141.1.S1_x_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03720OsAffx.6984.1.S1_at8/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.2.S1_x_at3/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.1.S1_at1/1111+1444412..1447909expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30801.1.S1_at--379--6931Chr11:1416370..1416394 (25 bp)
GTATGGATCAACTCTTCACTTCTTT
LOC_Os11g03650
OsAffx.30801.1.S1_at--11--10411Chr11:1416348..1416372 (25 bp)
TTTTGAACCTCACCCATCTAGATGT
LOC_Os11g03650
OsAffx.30801.1.S1_at--84--10851Chr11:1416285..1416309 (25 bp)
TTGGGAGGCTACCAGAGCTCTGTTA
LOC_Os11g03650
OsAffx.30801.1.S1_at--625--6411Chr11:1416211..1416235 (25 bp)
GATCTGCAACGCTACTTATTTCGGA
LOC_Os11g03650
OsAffx.30801.1.S1_at--653--6851Chr11:1416149..1416173 (25 bp)
GTTTGATGATTTGCACGGCCGTGAA
LOC_Os11g03650
OsAffx.30801.1.S1_at--968--291Chr11:1416106..1416130 (25 bp)
ATAGCAGTAGCACCTTCCATCATGA
LOC_Os11g03650
OsAffx.30801.1.S1_at--259--551Chr11:1416068..1416092 (25 bp)
ATCCCTTGTGTTTTGTGTCTACGTA
LOC_Os11g03650
OsAffx.30801.1.S1_at--972--1671Chr11:1416015..1416039 (25 bp)
AGCCTGGCTTTGACAATCTGCATAT
LOC_Os11g03650
OsAffx.30801.1.S1_at--533--2331Chr11:1415974..1415998 (25 bp)
AAAGTTGCTAGCAGTTCGCTCCAGA
LOC_Os11g03650
OsAffx.30801.1.S1_at--1055--6131Chr11:1415951..1415975 (25 bp)
GAGGGTCACTGCAACGATCCAATGT
LOC_Os11g03650
OsAffx.30801.1.S1_at--900--2971Chr11:1415931..1415955 (25 bp)
AATGTGAGGATGCTACTGCTGCTGC
LOC_Os11g03650
Target Sequence 
GTATGGATCAACTCTTCACTTCTTTTGAACCTCACCCATCTAGATGTGTCAGTGCATGTGGTGCAAGAACAGGACATGGA
AACCCTTGGGAGGCTACCAGAGCTCTGTTATCTCAAACTGTGTTCAGATTACACCAGGCTAGTAAGCATAAGGAATGGTG
ATCTGCAACGCTACTTATTTCGGAAATTGAGATTCTTTGTTTCTCCCTTTTTATTTGCCCGGTTTGATGATTTGCACGGC
CGTGAAAACGACGGCGGCATATGCATAGCAGTAGCACCTTCCATCATGATGCCAAGCCTTGAATCCCTTGTGTTTTGTGT
CTACGTACGGTTCCTAAAAGATATGGTGGAAATGCAGCCTGGCTTTGACAATCTGCATATGCAGCTTGGCTTTGAAAAAG
TTGCTAGCAGTTCGCTCCAGAGGGTCACTGCAACGATCCAATGTGAGGATGCTACTGCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis