Browse Element(s) Details


OsAffx.19468.2.S1_at

Description tigr:9639.m00275
TID=OsAffx.19468.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AE003846 CG11077-PA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0367011/11Mpv17/PMP22 family protein, expressed
LOC_Os12g034305/11Mpv17/PMP22 family protein, expressed
LOC_Os09g399201/11beta-1,4-mannan synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03620Os.52316.1.S1_at10/1111+1404321..1406005expressed protein
LOC_Os11g03620Os.57024.1.S1_at1/1111+1404321..1406005expressed protein
LOC_Os11g03630Os.6369.1.S1_at6/1111+1407946..1409169hypothetical protein
LOC_Os11g03640OsAffx.30800.2.S1_at11/1111+1410111..1412555expressed protein
LOC_Os11g03640OsAffx.30800.2.S1_x_at11/1111+1410111..1412555expressed protein
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03660NANA11+1424901..1425915VQ motif family protein, expressed
LOC_Os11g03670OsAffx.19468.2.S1_at11/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03670OsAffx.19468.1.S1_s_at10/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03680Os.16604.1.S1_at8/1111+1432751..1434200F-box domain containing protein, expressed
LOC_Os11g03690Os.49338.1.S1_at5/1111+1434830..1436704pentatricopeptide, putative, expressed
LOC_Os11g03700OsAffx.19469.2.S1_x_at11/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03700OsAffx.19469.1.S1_x_at7/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03710Os.23141.1.S1_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03710Os.23141.1.S1_x_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03720OsAffx.6984.1.S1_at8/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.2.S1_x_at3/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.1.S1_at1/1111+1444412..1447909expressed protein
LOC_Os11g03730Os.8403.1.S1_s_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03730Os.8403.1.S1_a_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0005778cellular_componentperoxisomal membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19468.2.S1_at--997--11Chr11:1431364..1431388 (25 bp)
ATTGGCGTCTCCTGTTAGCCTGGTA
LOC_Os11g03670
OsAffx.19468.2.S1_at--679--9271Chr11:1431224..1431379 (25 bp)
TCCTGTTAGCCTGGTACCTGCTGGC
LOC_Os11g03670
OsAffx.19468.2.S1_at--416--4296Chr11:24202749..24202771 (23 bp)
CCTCTGCAGTACTGCTGATGCAGTA
NONE
OsAffx.19468.2.S1_at--163--4758Chr09:13812272..13812291 (20 bp)
GCTGATGCAGTAGCAGTGGCTGACA
NONE
OsAffx.19468.2.S1_at--997--6310Chr12:23013765..23013785 (21 bp)
ATGCAGTAGCAGTGGCTGACATGTG
NONE
OsAffx.19468.2.S1_at--796--8611Chr11:1429768..1429910 (25 bp)
TGTGGGTCCGGGAGTGGTTATCATC
LOC_Os11g03670
OsAffx.19468.2.S1_at--646--7892Chr12:1336421..1336445 (25 bp)
GGTTCTTGCTGCTAATTTTGTAGCC
LOC_Os12g03430
OsAffx.19468.2.S1_at--531--4752Chr12:1336414..1336438 (25 bp)
GCTGCTAATTTTGTAGCCCTTGCGT
LOC_Os12g03430
OsAffx.19468.2.S1_at--658--3132Chr12:1336408..1336432 (25 bp)
AATTTTGTAGCCCTTGCGTGGAACG
LOC_Os12g03430
OsAffx.19468.2.S1_at--598--9992Chr12:1336401..1336425 (25 bp)
TAGCCCTTGCGTGGAACGTGATTCT
LOC_Os12g03430
OsAffx.19468.2.S1_at--886--10672Chr12:1336395..1336419 (25 bp)
TTGCGTGGAACGTGATTCTATCATT
LOC_Os12g03430
Target Sequence 
ATTGGCGTCTCCTGTTAGCCTGGTACCTGCTGGCTCTTGATAAGCATCCCATCACCACTAAGGCTGTTACCTCTGCCGTC
CTAACCCTGACCGGAGACCTCATCTGCCAGCTTGCAATTGATAAAGTGCCAAAGCTAGATTTGAAGAGAACGTTTGTATT
CACATTTTTGGGACTTGTCCTGGTGGGGCCAACATTGCATGTCTGGTACTTGTACTTGAGTAAATTAGTGACGATCAATG
GTGCATCAGGTGCAATTGCTCGCCTCTTACTTGATCAGTTCATTTTCTCTCCCATTTTCATTGGAGTGTTTATGAGTTTA
CTCGTCACCTTGGAGGGAAAGCCTTCTCTTGTAGTTCCAAAGCTCAAGCAGATCCTCTGCAGTACTGCTGATGCAGTAGC
AGTGGCTGACATGTGGGTCCGGGAGTGGTTATCATCAGTGATTGCGAATTGGCAATTGTGGATACCCTTTCAGTTCTTGA
ATTTTTACTTTGTCCCACAAAAATTTCAGGTTCTTGCTGCTAATTTTGTAGCCCTTGCGTGGAACGTGATTCTATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19468.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis