Browse Element(s) Details


OsAffx.19468.1.S1_s_at

Description tigr:9640.m00256
TID=OsAffx.19468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT001037 At5g19750T29J13_170
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0367010/11Mpv17/PMP22 family protein, expressed
LOC_Os12g0343010/11Mpv17/PMP22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03620Os.52316.1.S1_at10/1111+1404321..1406005expressed protein
LOC_Os11g03620Os.57024.1.S1_at1/1111+1404321..1406005expressed protein
LOC_Os11g03630Os.6369.1.S1_at6/1111+1407946..1409169hypothetical protein
LOC_Os11g03640OsAffx.30800.2.S1_at11/1111+1410111..1412555expressed protein
LOC_Os11g03640OsAffx.30800.2.S1_x_at11/1111+1410111..1412555expressed protein
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03660NANA11+1424901..1425915VQ motif family protein, expressed
LOC_Os11g03670OsAffx.19468.2.S1_at11/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03670OsAffx.19468.1.S1_s_at10/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03680Os.16604.1.S1_at8/1111+1432751..1434200F-box domain containing protein, expressed
LOC_Os11g03690Os.49338.1.S1_at5/1111+1434830..1436704pentatricopeptide, putative, expressed
LOC_Os11g03700OsAffx.19469.2.S1_x_at11/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03700OsAffx.19469.1.S1_x_at7/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03710Os.23141.1.S1_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03710Os.23141.1.S1_x_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03720OsAffx.6984.1.S1_at8/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.2.S1_x_at3/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.1.S1_at1/1111+1444412..1447909expressed protein
LOC_Os11g03730Os.8403.1.S1_s_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03730Os.8403.1.S1_a_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19468.1.S1_s_at--192--7852Chr12:1337982..1338006 (25 bp)
GGTACCTGCTGGCTCTTGATAAGCA
LOC_Os12g03430
OsAffx.19468.1.S1_s_at--771--8832Chr12:1337966..1337990 (25 bp)
TGATAAGCATCCCATCACCACTAAG
LOC_Os12g03430
OsAffx.19468.1.S1_s_at--1079--9752Chr12:1337945..1337969 (25 bp)
TAAGGCTGTTACCTCTGCCGTCCTA
LOC_Os12g03430
OsAffx.19468.1.S1_s_at--901--5452Chr12:1337187..1337211 (25 bp)
GAACGTTTGTATTCACATTTTTGGG
LOC_Os12g03430
OsAffx.19468.1.S1_s_at--607--7551NONE
GGGCCAACATTGCATGTCTGGTACT
NONE
OsAffx.19468.1.S1_s_at--23--3172Chr12:1336986..1337010 (25 bp)
AATTGCTCGCCTCTTACTTGATCAG
LOC_Os12g03430
OsAffx.19468.1.S1_s_at--384--10792Chr12:1336844..1336864 (21 bp)
TTGATCAGTTCATTTTCTCTCCCAT
LOC_Os12g03430
OsAffx.19468.1.S1_s_at--842--692Chr12:1336803..1336827 (25 bp)
ATGAGTTTACTCGTCACCTTGGAGG
LOC_Os12g03430
OsAffx.19468.1.S1_s_at--374--3372Chr12:1336789..1336813 (25 bp)
CACCTTGGAGGGAAAGCCTTCTCTT
LOC_Os12g03430
OsAffx.19468.1.S1_s_at--801--2652Chr12:1336776..1336800 (25 bp)
AAGCCTTCTCTTGTAGTTCCAAAGC
LOC_Os12g03430
OsAffx.19468.1.S1_s_at--791--9572Chr12:1336595..1336619 (25 bp)
TCTTGAATTTTTACTTTGTCCCACA
LOC_Os12g03430
Target Sequence 
GGTACCTGCTGGCTCTTGATAAGCATCCCATCACCACTAAGGCTGTTACCTCTGCCGTCCTAACCCTGACCGGAGACCTC
ATCTGCCAGCTCGCAATTGATAAAGTGCCAAAGCTAGATTTGAAGAGAACGTTTGTATTCACATTTTTGGGACTCGTCCT
GGTGGGGCCAACATTGCATGTCTGGTACTTGTACTTGAGTAAATTAGTGATGATCAATGGTGCGTCAGGTGCAATTGCTC
GCCTCTTACTTGATCAGTTCATTTTCTCTCCCATTTTCATTGGAGTGTTTATGAGTTTACTCGTCACCTTGGAGGGAAAG
CCTTCTCTTGTAGTTCCAAAGCTCAAGCAGGAGTGGTTATCATCAGTGATTGCAAATTGGCAATTGTGGATACCTTTTCA
GTTCTTGAATTTTTACTTTGTCCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19468.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis