Browse Element(s) Details


Os.27524.2.S1_x_at

Description gb:AK111099.1
DB_XREF= gi:32996308
TID=Os.27524.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G11, full insert sequence.
FL= gb:AK111099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g033408/11expressed protein
LOC_Os11g035705/11expressed protein
LOC_Os09g169202/11S276, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03270Os.5915.1.S1_at11/1112+1264350..1268139Protein of unknown function, DUF609 containing protein, expressed
LOC_Os12g03290Os.16683.1.S1_at8/1112+1268565..1273766AP2 domain containing protein, expressed
LOC_Os12g03304NANA12+1275104..1279591retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03320OsAffx.31562.2.S1_s_at11/1112+1283830..1285605hypothetical protein
LOC_Os12g03330OsAffx.31563.1.S1_at11/1112+1290584..1290910hypothetical protein
LOC_Os12g03340Os.27524.1.S1_at11/1112+1291701..1299940expressed protein
LOC_Os12g03340Os.27524.2.S1_x_at8/1112+1291701..1299940expressed protein
LOC_Os12g03350Os.50919.1.S1_at4/1112+1301340..1302288hypothetical protein
LOC_Os12g03360Os.50942.1.S1_at6/1112+1304139..1305879Nse1 non-SMC component of SMC5-6 complex family protein
LOC_Os12g03370Os.50598.1.S1_at11/1112+1308547..1309703Harpin-induced protein 1 containing protein, expressed
LOC_Os12g03380OsAffx.30177.4.S1_at11/1112+1313533..1314090expressed protein
LOC_Os12g03380OsAffx.30177.1.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.8747.3.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.33750.2.S1_x_at1/1112+1313533..1314090expressed protein
LOC_Os12g03390OsAffx.31564.2.S1_at11/1112+1314753..1316248F-box domain containing protein, expressed
LOC_Os12g03400Os.6369.1.S1_at11/1112+1316605..1318869expressed protein
LOC_Os12g03410OsAffx.30800.1.S1_at11/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03410OsAffx.30800.2.S1_x_at2/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006629biological_processlipid metabolism
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
GO:0016491molecular_functionoxidoreductase activity
GO:0042284molecular_functionsphingolipid delta-4 desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27524.2.S1_x_at--963--10072Chr12:1299670..1299694 (25 bp)
TAGGATTGGTTCGATCTTGGCCGGC
LOC_Os12g03340
Os.27524.2.S1_x_at--714--10731Chr12:1299654..1299678 (25 bp)
TTGGCCGGCCAAGAAGTACAAGTTT
LOC_Os12g03340
Os.27524.2.S1_x_at--691--1212Chr12:1299596..1299620 (25 bp)
AGTTCGGTGGTGGAGCCTTCGCCTT
LOC_Os12g03340
Os.27524.2.S1_x_at--745--4031Chr12:1299503..1299527 (25 bp)
CGTTCAGCGAGCAGGCGTTTGTTGA
LOC_Os12g03340
Os.27524.2.S1_x_at--182--2212Chr12:1299470..1299494 (25 bp)
ACAAGCTCAACAACACGGCGACTAG
LOC_Os12g03340
Os.27524.2.S1_x_at--840--8371NONE
GGCGACTAGGATCCAGACACTTTCA
NONE
Os.27524.2.S1_x_at--668--5573Chr12:1296279..1296303 (25 bp)
GAAAGTATCATTCCTGTACCTGTCA
LOC_Os12g03340
Os.27524.2.S1_x_at--204--6992Chr12:1296264..1296288 (25 bp)
GTACCTGTCAAATGATATCCTGCAA
LOC_Os12g03340
Os.27524.2.S1_x_at--466--5211Chr12:1296206..1296230 (25 bp)
GAATTTTGGAGGGTTCTTCCTGGAT
LOC_Os12g03340
Os.27524.2.S1_x_at--1088--10311Chr09:10339340..10339364 (25 bp)
TTTCATTTTGCTTGCATGCCCAGAT
LOC_Os09g16920
Os.27524.2.S1_x_at--1016--10731Chr09:10339351..10339375 (25 bp)
TTGCATGCCCAGATTGTGGATGGTT
LOC_Os09g16920
Target Sequence 
TAGGATTGGTTCGATCTTGGCCGGCCAAGAAGTACAAGTTTCTTCGGGGGATTAGCTTGTTCGCGAGGGGGAGGAGTTCG
GTGGTGGAGCCTTCGCCTTCGTGATGGCGGACACCAAGGCGGAGGCAAAGGCGGAAACTATCGGCGGCGGCGGCGGCGGC
TCTGGCTCGTTCAGCGAGCAGGCGTTTGTTGAGAAGCTTAACAAGCTCAACAACACGGCGACTAGGATCCAGACACTTTC
AAATTGGTGCATTTTTCACCGAAAGAGAGCCAGAAAGGTTGTTGATACATGGGAGAAGCAGTATAACAGTGCAAATAAGG
ATAAGAAAGTATCATTCCTGTACCTGTCAAATGATATCCTGCAAAATAGTAAACGCAAGGGAGGGGAGTTTGTGAATGAA
TTTTGGAGGGTTCTTCCTGGATTATTGAAAGACTTTTATGTCAATGGGGGAGAAGATGGAAAGAAAGTAGTTGGAAGATT
ATATTATGAACTTGTGGCTTCAGTAAAATCCATTTCATTTTGCTTGCATGCCCAGATTGTGGATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27524.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis