Browse Element(s) Details


OsAffx.30177.4.S1_at

Description tigr:9640.m00251
TID=OsAffx.30177.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0338011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03330OsAffx.31563.1.S1_at11/1112+1290584..1290910hypothetical protein
LOC_Os12g03340Os.27524.1.S1_at11/1112+1291701..1299940expressed protein
LOC_Os12g03340Os.27524.2.S1_x_at8/1112+1291701..1299940expressed protein
LOC_Os12g03350Os.50919.1.S1_at4/1112+1301340..1302288hypothetical protein
LOC_Os12g03360Os.50942.1.S1_at6/1112+1304139..1305879Nse1 non-SMC component of SMC5-6 complex family protein
LOC_Os12g03370Os.50598.1.S1_at11/1112+1308547..1309703Harpin-induced protein 1 containing protein, expressed
LOC_Os12g03380OsAffx.30177.4.S1_at11/1112+1313533..1314090expressed protein
LOC_Os12g03380OsAffx.30177.1.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.8747.3.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.33750.2.S1_x_at1/1112+1313533..1314090expressed protein
LOC_Os12g03390OsAffx.31564.2.S1_at11/1112+1314753..1316248F-box domain containing protein, expressed
LOC_Os12g03400Os.6369.1.S1_at11/1112+1316605..1318869expressed protein
LOC_Os12g03410OsAffx.30800.1.S1_at11/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03410OsAffx.30800.2.S1_x_at2/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03420NANA12+1331912..1332472VQ motif family protein
LOC_Os12g03430OsAffx.19468.1.S1_s_at10/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.1.S1_at9/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.2.S1_at5/1112+1335826..1338425Mpv17/PMP22 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30177.4.S1_at--603--8852Chr12:18597934..18597958 (25 bp)
TGATGAGGACCAGCTCCGACAGGGA
NONE
OsAffx.30177.4.S1_at--252--8052Chr12:1313862..1313886 (25 bp)
GGAGATGATCCATAGATGGGTTTCT
LOC_Os12g03380
OsAffx.30177.4.S1_at--231--812Chr12:1313877..1313901 (25 bp)
ATGGGTTTCTAGCTTTCTGCTGCTT
LOC_Os12g03380
OsAffx.30177.4.S1_at--256--9492Chr12:1313892..1313916 (25 bp)
TCTGCTGCTTTGCTCACGAAGGACT
LOC_Os12g03380
OsAffx.30177.4.S1_at--867--10672Chr12:1313901..1313925 (25 bp)
TTGCTCACGAAGGACTCTCCCGAAG
LOC_Os12g03380
OsAffx.30177.4.S1_at--92--9512Chr12:1313916..1313940 (25 bp)
TCTCCCGAAGCCTCATGCGGCTGGG
LOC_Os12g03380
OsAffx.30177.4.S1_at--793--5031Chr12:1313947..1313971 (25 bp)
GCAGACAACCACAACGGCCATGCTG
LOC_Os12g03380
OsAffx.30177.4.S1_at--287--631Chr12:1313966..1313990 (25 bp)
ATGCTGCCCAGCAATGGAGACGAGC
LOC_Os12g03380
OsAffx.30177.4.S1_at--49--3213Chr12:1313977..1314001 (25 bp)
CAATGGAGACGAGCAGCGATGACCT
LOC_Os12g03380
OsAffx.30177.4.S1_at--72--4631Chr12:1313992..1314016 (25 bp)
GCGATGACCTCGGTGCAAGGACGCC
LOC_Os12g03380
OsAffx.30177.4.S1_at--321--3911Chr12:1314017..1314041 (25 bp)
CGGCCAAAACTGGAGCCGTTGCGGA
LOC_Os12g03380
Target Sequence 
TGATGAGGACCAGCTCCGACAGGGAGATGATCCATAGATGGGTTTCTAGCTTTCTGCTGCTTTGCTCACGAAGGACTCTC
CCGAAGCCTCATGCGGCTGGGCGACAAGCAGACAACCACAACGGCCATGCTGCCCAGCAATGGAGACGAGCAGCGATGAC
CTCGGTGCAAGGACGCCCGGCCAAAACTGGAGCCGTTGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30177.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis