Browse Element(s) Details


Os.28138.1.S1_at

Description gb:AK102502.1
DB_XREF= gi:32987711
TID=Os.28138.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095C17, full insert sequence.
FL= gb:AK102502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g031809/11protein kinase, putative, expressed
LOC_Os11g034601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03130Os.48443.1.S1_at11/1112+1188043..1190508CDC45-like protein, expressed
LOC_Os12g03140OsAffx.19463.1.S1_at7/1112+1191232..1192383hypothetical protein
LOC_Os12g03150Os.3389.2.S1_at11/1112+1199560..1200971Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g03160OsAffx.13097.1.S1_s_at11/1112+1202491..1205222hypothetical protein
LOC_Os12g03170NANA12+1210889..1211347hypothetical protein
LOC_Os12g03180Os.28138.1.S1_at9/1112+1211877..1215296protein kinase, putative, expressed
LOC_Os12g03190Os.9497.1.S1_at10/1112+1215713..1219583homoserine dehydrogenase family protein, expressed
LOC_Os12g03200NANA12+1219955..1224034MatE family protein, expressed
LOC_Os12g03210NANA12+1225729..1228934transposon protein, putative, Mariner sub-class
LOC_Os12g03220OsAffx.31561.1.S1_at10/1112+1230128..1231993hypothetical protein
LOC_Os12g03230Os.11241.1.S1_at9/1112+1234637..1236472MatE family protein, expressed
LOC_Os12g03240OsAffx.7468.1.S1_at11/1112+1237813..1238252hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28138.1.S1_at--1105--5652Chr12:1212301..1212325 (25 bp)
GACATGTTCGGAATGCCACTGGACT
LOC_Os12g03180
Os.28138.1.S1_at--180--592Chr12:1212289..1212313 (25 bp)
ATGCCACTGGACTTCTAAGACTAGT
LOC_Os12g03180
Os.28138.1.S1_at--1065--8932Chr12:1212238..1212262 (25 bp)
TGACAGAAGAGTTTTCCTTTACCCT
LOC_Os12g03180
Os.28138.1.S1_at--273--9012Chr12:1212099..1212123 (25 bp)
TGAATCCTTTGATGCACAGCTGTTG
LOC_Os12g03180
Os.28138.1.S1_at--313--2152Chr12:1212084..1212108 (25 bp)
ACAGCTGTTGTGTCTAGTGAATATT
LOC_Os12g03180
Os.28138.1.S1_at--587--4891Chr12:1212028..1212052 (25 bp)
GCTTTATCTGATTCATATTTCCCTG
LOC_Os12g03180
Os.28138.1.S1_at--300--6852Chr12:1211972..1211996 (25 bp)
GTTTGCTGATTTATACTCTTGGTAA
LOC_Os12g03180
Os.28138.1.S1_at--1003--7032Chr12:1211951..1211975 (25 bp)
GTAAATGAGCACTATCTCCTTGAAT
LOC_Os12g03180
Os.28138.1.S1_at--113--612Chr12:1211905..1211929 (25 bp)
ATGCCCTGAGTTGTTTTGCTGTATC
LOC_Os12g03180
Os.28138.1.S1_at--189--5231Chr11:1324528..1324552 (25 bp)
GAATTTCCTCCAGAGTGTATTTTGG
NONE
Os.28138.1.S1_at--702--3972Chr12:1211774..1211796 (23 bp)
CGGGTATTGGGTTAACTGCTGCTTA
NONE
Target Sequence 
GACATGTTCGGAATGCCACTGGACTTCTAAGACTAGTGCTTAAATGGAACAGAATAACTCTTTTGACAGAAGAGTTTTCC
TTTACCCTCTCACTCACTCCTTGAGAGTGAGGTAAGGTTCCCAAGATGTCAGAATATGAAATGAAGTGCTATGTAGTATA
TTGGTGCATTCTTGATGATAAGAAGAGCTTGGTTTTTTTTTNTTGAATCCTTTGATGCACAGCTGTTGTGTCTAGTGAAT
ATTTACATGAGTTATTGAAATTACANTTCTCANNGCTTTATCTGATTCATATTTCCCTGATAAAATTTGAAGTGTANCAA
ATGGGCATTAGTTTGCTGATTTATACTCTTGGTAAATGAGCACTATCTCCTTGAATTGCAAATGTATCTTACTTTTNATG
CCCTGAGTTGTTTTGCTGTATCNCTTAAATGAGAATTCCTTTTTCCCNCTGTTGATGTAGTTGTTGCGGATGTAATTGAT
CTNTAGAATTTCCTCCAGAGTGTATTTTGGATAGCATCATCCAATNTGAATGCGGGTATTGGGTTAACTGCTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis