Browse Element(s) Details


OsAffx.19463.1.S1_at

Description tigr:9640.m00224
TID=OsAffx.19463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g031407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03090Os.9193.1.S1_s_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03090Os.37737.1.S1_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os12g03110Os.16784.1.S1_at8/1112+1179462..1180200ZF-HD protein dimerisation region containing protein
LOC_Os12g03120OsAffx.19462.1.S1_at11/1112+1182405..1182748hypothetical protein
LOC_Os12g03130Os.48443.1.S1_at11/1112+1188043..1190508CDC45-like protein, expressed
LOC_Os12g03140OsAffx.19463.1.S1_at7/1112+1191232..1192383hypothetical protein
LOC_Os12g03150Os.3389.2.S1_at11/1112+1199560..1200971Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g03160OsAffx.13097.1.S1_s_at11/1112+1202491..1205222hypothetical protein
LOC_Os12g03170NANA12+1210889..1211347hypothetical protein
LOC_Os12g03180Os.28138.1.S1_at9/1112+1211877..1215296protein kinase, putative, expressed
LOC_Os12g03190Os.9497.1.S1_at10/1112+1215713..1219583homoserine dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19463.1.S1_at--16--10391Chr12:1192303..1192327 (25 bp)
TTTTCTCTTCCATCCCAAGGAGCAG
LOC_Os12g03140
OsAffx.19463.1.S1_at--776--8591Chr12:1192247..1192271 (25 bp)
TGGGCCAAGAAATCTGCTCTGCAAT
LOC_Os12g03140
OsAffx.19463.1.S1_at--530--2751Chr12:1192241..1192265 (25 bp)
AAGAAATCTGCTCTGCAATACCGCC
LOC_Os12g03140
OsAffx.19463.1.S1_at--984--3051NONE
AATCTGCTCTGCAATACCGCCTGAT
NONE
OsAffx.19463.1.S1_at--638--9011NONE
TGCAATACCGCCTGATCTACAAGAC
NONE
OsAffx.19463.1.S1_at--1005--3091NONE
AATACCGCCTGATCTACAAGACTAC
NONE
OsAffx.19463.1.S1_at--216--9971NONE
TACCGCCTGATCTACAAGACTACGA
NONE
OsAffx.19463.1.S1_at--419--4151Chr12:1191299..1191318 (20 bp)
CGCCTGATCTACAAGACTACGATAG
LOC_Os12g03140
OsAffx.19463.1.S1_at--478--5691Chr12:1191285..1191309 (25 bp)
GACTACGATAGAAACTTCAACATTG
LOC_Os12g03140
OsAffx.19463.1.S1_at--928--5531Chr12:1191275..1191299 (25 bp)
GAAACTTCAACATTGGCAGGGAGCA
LOC_Os12g03140
OsAffx.19463.1.S1_at--352--10511Chr12:1191270..1191294 (25 bp)
TTCAACATTGGCAGGGAGCAAACCA
LOC_Os12g03140
Target Sequence 
TTTTCTCTTCCATCCCAAGGAGCAGCAGCGAAGCTGGAGAGAGAAAAAGGACAAAATGGGCCAAGAAATCTGCTCTGCAA
TACCGCCTGATCTACAAGACTACGATAGAAACTTCAACATTGGCAGGGAGCAAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis