Browse Element(s) Details


Os.48443.1.S1_at

Description gb:AK073156.1
DB_XREF= gi:32983179
TID=Os.48443.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033005P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033005P21, full insert sequence.
FL= gb:AK073156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0313011/11CDC45-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03080Os.50512.1.S1_at10/1112+1157566..1164277NB-ARC domain containing protein, expressed
LOC_Os12g03090Os.9193.1.S1_s_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03090Os.37737.1.S1_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os12g03110Os.16784.1.S1_at8/1112+1179462..1180200ZF-HD protein dimerisation region containing protein
LOC_Os12g03120OsAffx.19462.1.S1_at11/1112+1182405..1182748hypothetical protein
LOC_Os12g03130Os.48443.1.S1_at11/1112+1188043..1190508CDC45-like protein, expressed
LOC_Os12g03140OsAffx.19463.1.S1_at7/1112+1191232..1192383hypothetical protein
LOC_Os12g03150Os.3389.2.S1_at11/1112+1199560..1200971Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g03160OsAffx.13097.1.S1_s_at11/1112+1202491..1205222hypothetical protein
LOC_Os12g03170NANA12+1210889..1211347hypothetical protein
LOC_Os12g03180Os.28138.1.S1_at9/1112+1211877..1215296protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006279biological_processpremeiotic DNA synthesis
GO:0048229biological_processgametophyte development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48443.1.S1_at--910--8071Chr12:1190009..1190033 (25 bp)
GGAGCTTGAGGCTTGATTCCTTGAT
LOC_Os12g03130
Os.48443.1.S1_at--1039--1271Chr12:1190077..1190101 (25 bp)
AGATCGATCTGGTGGTACATGGCAT
LOC_Os12g03130
Os.48443.1.S1_at--1042--3491Chr12:1190094..1190118 (25 bp)
CATGGCATGTTCTATTTTCCTCATC
LOC_Os12g03130
Os.48443.1.S1_at--1114--3431Chr12:1190138..1190162 (25 bp)
CAGTTAGGGATAGCAGCCTGGCAAA
LOC_Os12g03130
Os.48443.1.S1_at--355--6071Chr12:1190179..1190203 (25 bp)
GAGTTTACTTGTTCAACGGCTGTGT
LOC_Os12g03130
Os.48443.1.S1_at--550--511Chr12:1190354..1190378 (25 bp)
ATCGATGCTTGTATTTGTATTCCCA
LOC_Os12g03130
Os.48443.1.S1_at--948--91Chr12:1190372..1190396 (25 bp)
ATTCCCATAAGCTTGCAGTTTCTAT
LOC_Os12g03130
Os.48443.1.S1_at--893--3051Chr12:1190417..1190441 (25 bp)
AATCTTGTACCATTGCAGTTACTTG
LOC_Os12g03130
Os.48443.1.S1_at--810--7051Chr12:1190453..1190477 (25 bp)
GTAACTGATAAGTGTCTTCCTTGTT
LOC_Os12g03130
Os.48443.1.S1_at--179--9251Chr12:1190470..1190494 (25 bp)
TCCTTGTTATTTTTTGTGCAGTCAT
LOC_Os12g03130
Os.48443.1.S1_at--531--8691Chr12:1190484..1190508 (25 bp)
TGTGCAGTCATCATAACTTCAGACC
LOC_Os12g03130
Target Sequence 
GGAGCTTGAGGCTTGATTCCTTGATTAAACACTCTAAAATAAAGGAGCTTGAGGGCTGGTGGAGTGGTAGATCGATCTGG
TGGTACATGGCATGTTCTATTTTCCTCATCACCCCACATGATCTTCACTCAGTTAGGGATAGCAGCCTGGCAAAAATTGC
TTGATTTTCAGAGTTTACTTGTTCAACGGCTGTGTTTTATGTGTTACTGAAGGGAAGATTGTTTGCTGAGTGTANCTGCT
CCATTATTAGCAAATGATAGATCAATAGATTCAGATGGAAACCTGATTCTAACACNCAAGGGGCAAGGTATATTTGCTTG
CTGATTTTCATACTAGATAGATGGAATCGATGCTTGTATTTGTATTCCCATAAGCTTGCAGTTTCTATTGTAGGGTAGTG
TTGTAATCAATCTTGTACCATTGCAGTTACTTGATATTTTTAGTGTAACTGATAAGTGTCTTCCTTGTTATTTTTTGTGC
AGTCATCATAACTTCAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis