Browse Element(s) Details


OsAffx.31561.1.S1_at

Description tigr:9640.m00232
TID=OsAffx.31561.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6186010/11hypothetical protein
LOC_Os12g0322010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61820Os.52839.1.S1_x_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61820Os.7214.1.S1_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61840Os.16408.1.S1_at1/113+34995699..34997516hypothetical protein
LOC_Os03g61850NANA3+35004591..35007446transposon protein, putative, Mutator sub-class
LOC_Os03g61860OsAffx.31561.1.S1_at10/113+35011077..35013575hypothetical protein
LOC_Os03g61870NANA3+35014043..35017247transposon protein, putative, Mariner sub-class
LOC_Os03g61890Os.5351.2.S1_s_at11/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61890Os.5351.1.S1_at10/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61900Os.5024.1.S1_at11/113+35029607..35030556expressed protein
LOC_Os03g61910Os.27140.1.S1_a_at11/113+35035881..35037640retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31561.1.S1_at--656--8372Chr03:35011148..35011172 (25 bp)
GGCGTATCAGCTTGCGGTTTTGATC
LOC_Os03g61860
OsAffx.31561.1.S1_at--893--392Chr03:35011153..35011177 (25 bp)
ATCAGCTTGCGGTTTTGATCCAAAA
LOC_Os03g61860
OsAffx.31561.1.S1_at--818--3932Chr03:35011273..35011297 (25 bp)
CGGCAGCGACATCGGAGATTTGCAA
LOC_Os03g61860
OsAffx.31561.1.S1_at--692--972Chr03:35011363..35011387 (25 bp)
AGGAGGAGGCTTACCGACCTCCTGT
LOC_Os03g61860
OsAffx.31561.1.S1_at--852--5832Chr03:35011378..35011402 (25 bp)
GACCTCCTGTTCTGATTCCGGTGGC
LOC_Os03g61860
OsAffx.31561.1.S1_at--78--10652Chr03:35011393..35011417 (25 bp)
TTCCGGTGGCAACAGCTAGGGACTT
LOC_Os03g61860
OsAffx.31561.1.S1_at--789--51NONE
ATTGACTCAAAGGACTATGTTGGGA
NONE
OsAffx.31561.1.S1_at--259--5172Chr03:35012719..35012743 (25 bp)
GCAAGCGTCACGCAAACTGACATGA
LOC_Os03g61860
OsAffx.31561.1.S1_at--848--9832Chr03:35012763..35012787 (25 bp)
TAAAGATGTTAGCATCGACGAGGAC
LOC_Os03g61860
OsAffx.31561.1.S1_at--560--293Chr11:14972136..14972155 (20 bp)
ATAGCGGCCTAGAAGAACTCCTACA
NONE
OsAffx.31561.1.S1_at--106--1992Chr03:35012865..35012889 (25 bp)
ACTCCTACAAGACCAAGACGCACTG
LOC_Os03g61860
Target Sequence 
GGCGTATCAGCTTGCGGTTTTGATCCAAAAGGCGGCGGCGGGAGGGGGCTCAGATGTGGCAGCGGCCTTGGAGGTTTGCA
AGAAGGCGGCGGAGGCAACGGCGGCGGGTGGAGCCAGTTCAGATGCGGCAGCGACATCGGAGATTTGCAAGGCGGCAGAT
GTGATGGTCAAGGAGGTGGCGGCGCNCGCGGATCTGATACAGGAGGGGTCGGCGGAGGAGGAGGCTTACCGACCTCCTGT
TCTGATTCCGGTGGCAACAGCTAGGGACTTTGGCGGCAGTATGCGTGGATTGACTCAAAGGACTATGTTGGGAGATGATA
GCGACCACATGGCCATGTTCGAGAAGAAGGCAAGCGTCACGCAAACTGACATGAAGGAGAAGAGGGGAAAAGCTAAAGAT
GTTAGCATCGACGAGGACAAGTCAAGCGATGATGATGTTGATATGGTCATTGGGGGATATGCGCAAGATCCATACGATGA
TAGCGGCCTAGAAGAACTCCTACAAGACCAAGACGCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis