Browse Element(s) Details


Os.5351.2.S1_s_at

Description gb:CA759171
DB_XREF= gi:25803210
DB_XREF=BR060003A10A12.ab1
CLONE=BR060003A10A12.ab1
TID=Os.5351.2
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.5351 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T01098 (A.thaliana) T01098 chloroplast outer envelope protein OEP86 homolog T10P11.19 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6189011/11AIG1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61850NANA3+35004591..35007446transposon protein, putative, Mutator sub-class
LOC_Os03g61860OsAffx.31561.1.S1_at10/113+35011077..35013575hypothetical protein
LOC_Os03g61870NANA3+35014043..35017247transposon protein, putative, Mariner sub-class
LOC_Os03g61890Os.5351.2.S1_s_at11/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61890Os.5351.1.S1_at10/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61900Os.5024.1.S1_at11/113+35029607..35030556expressed protein
LOC_Os03g61910Os.27140.1.S1_a_at11/113+35035881..35037640retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g61920Os.14084.1.S1_at11/113+35039306..35042530electron transfer flavoprotein, alpha subunit containing protein, expressed
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0045036biological_processprotein targeting to chloroplast
GO:0009707cellular_componentchloroplast outer membrane
GO:0004888molecular_functiontransmembrane receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5351.2.S1_s_at--1149--9151Chr03:35027251..35027275 (25 bp)
TGCCCTATTAGGTGTCTGTTCAATG
LOC_Os03g61890
Os.5351.2.S1_s_at--52--6891Chr03:35027281..35027305 (25 bp)
GTATTTATGGAACAGGATGCATCCT
LOC_Os03g61890
Os.5351.2.S1_s_at--489--5331Chr03:35028499..35028523 (25 bp)
GAAGTGCTCGGAAGCTTCAGAGTTC
LOC_Os03g61890
Os.5351.2.S1_s_at--677--8311Chr03:35028525..35028549 (25 bp)
GGCTCCTACTACTCAGCTAGGGATA
LOC_Os03g61890
Os.5351.2.S1_s_at--175--351Chr03:35028549..35028573 (25 bp)
ATAAGTTGAACCATCACTTTCAGTC
LOC_Os03g61890
Os.5351.2.S1_s_at--641--2751Chr03:35028581..35028605 (25 bp)
AAGACAAGTGTAGCTGTGCTGCCAT
LOC_Os03g61890
Os.5351.2.S1_s_at--950--1611Chr03:35028592..35028616 (25 bp)
AGCTGTGCTGCCATTTGATGTTTGC
LOC_Os03g61890
Os.5351.2.S1_s_at--924--9191Chr03:35028600..35028624 (25 bp)
TGCCATTTGATGTTTGCTTCCCTCC
LOC_Os03g61890
Os.5351.2.S1_s_at--141--5351Chr03:35028663..35028687 (25 bp)
GAAGATCTACTCTTGTTTTGGAGAA
LOC_Os03g61890
Os.5351.2.S1_s_at--6--10391Chr03:35028756..35028780 (25 bp)
TTTTCTCTGTGTTGCCCCTTTCGAT
LOC_Os03g61890
Os.5351.2.S1_s_at--1156--9151Chr03:35028768..35028792 (25 bp)
TGCCCCTTTCGATGAAGCAACTAAA
LOC_Os03g61890
Target Sequence 
TGCCCTATTAGGTGTCTGTTCAATGACAATGTATTTATGGAACAGGATGCATCCTTTTATTGATCGTAATTATTAATAGC
ACTGGTTATTTATATTTCAAAACTGAATTTCTCTTGGAAGGTCATGTAAAGGTTCTGTCCTTTCTTGGAGTCCTCCATTC
CAAGGTGCGTTGGGAAGTGCTCGGAAGCTTCAGAGTTCAGGCTCCTACTACTCAGCTAGGGATATAAGTTGAACCATCAC
TTTCAGTCNAAGAATCAAGACAAGTGTAGCTGTGCTGCCATTTGATGTTTGCTTCCCTCCCTCCGATGTGCNAGTTGGTG
GACAACTTTAAGANGCNAGAAGAAGATCTACTCTTGTTTTGGAGAAACTTGTGATCAGTAGCAGCTGTNTAAACCATAAT
ACCNTTGTAAGTTATTACCATCTTACCATCTNTTTTTTTTCTCTGTGTTGCCCCTTTCGATGAAGCAACTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5351.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis