Browse Element(s) Details


Os.5024.1.S1_at

Description gb:AU223051
DB_XREF= gi:15008663
DB_XREF=AU223051
CLONE=S3117
TID=Os.5024.1
CNT=59
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5024 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6190011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61850NANA3+35004591..35007446transposon protein, putative, Mutator sub-class
LOC_Os03g61860OsAffx.31561.1.S1_at10/113+35011077..35013575hypothetical protein
LOC_Os03g61870NANA3+35014043..35017247transposon protein, putative, Mariner sub-class
LOC_Os03g61890Os.5351.2.S1_s_at11/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61890Os.5351.1.S1_at10/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61900Os.5024.1.S1_at11/113+35029607..35030556expressed protein
LOC_Os03g61910Os.27140.1.S1_a_at11/113+35035881..35037640retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g61920Os.14084.1.S1_at11/113+35039306..35042530electron transfer flavoprotein, alpha subunit containing protein, expressed
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5024.1.S1_at--477--6131Chr03:35029996..35030020 (25 bp)
GAGGTATGTAGTTCGTGTTTTTCTT
LOC_Os03g61900
Os.5024.1.S1_at--874--7271Chr03:35029944..35029968 (25 bp)
GTGGTGCTGGAGCTTAAAACCTTTT
LOC_Os03g61900
Os.5024.1.S1_at--216--9831Chr03:35029930..35029954 (25 bp)
TAAAACCTTTTAGCCATGAACATGA
LOC_Os03g61900
Os.5024.1.S1_at--55--5711Chr03:35029890..35029914 (25 bp)
GACTAGTAGAGTCTTGTGCAAAGTT
LOC_Os03g61900
Os.5024.1.S1_at--1088--671Chr03:35029865..35029889 (25 bp)
ATGAGAAAACCTACTCCATGTCCCA
LOC_Os03g61900
Os.5024.1.S1_at--348--3691Chr03:35029840..35029864 (25 bp)
CTTTGTTGCCTGTTGTTCTTGTTCA
LOC_Os03g61900
Os.5024.1.S1_at--969--6731Chr03:35029826..35029850 (25 bp)
GTTCTTGTTCAGATTACCTATGCAG
LOC_Os03g61900
Os.5024.1.S1_at--679--2031Chr03:35029786..35029810 (25 bp)
ACTATGTGGTTGGTGAGCTTTCTAA
LOC_Os03g61900
Os.5024.1.S1_at--963--10231Chr03:35029738..35029762 (25 bp)
TTTGTCCTTTGATCTGGGAAGCTGA
LOC_Os03g61900
Os.5024.1.S1_at--260--2691Chr03:35029720..35029744 (25 bp)
AAGCTGATGGCTGTTGGAACCCTCA
LOC_Os03g61900
Os.5024.1.S1_at--1117--8171Chr03:35029705..35029729 (25 bp)
GGAACCCTCAGCCATGAATACTCAT
LOC_Os03g61900
Target Sequence 
GAGGTATGTAGTTCGTGTTTTTCTTGGCAAGATGAGATATTGAGATGTTCATGTGGTGCTGGAGCTTAAAACCTTTTAGC
CATGAACATGAACTCAAGAAAGTATGGACTAGTAGAGTCTTGTGCAAAGTTATGAGAAAACCTACTCCATGTCCCACTTT
GTTGCCTGTTGTTCTTGTTCAGATTACCTATGCAGAAAAACTCTGATGATACTATGTGGTTGGTGAGCTTTCTAACTATG
AAATTATTATCTTTCTGTTTTGTCCTTTGATCTGGGAAGCTGATGGCTGTTGGAACCCTCAGCCATGAATACTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis