Browse Element(s) Details


OsAffx.32203.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=ndhB
TID=OsAffx.32203.1
CNT=1
FEA=DNA_74
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NADH dehydrogenase ND2 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=NADH dehydrogenase ND2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g619301/11acyl-CoA binding family protein, putative, expressed
LOC_Os07g284701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61890Os.5351.2.S1_s_at11/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61890Os.5351.1.S1_at10/113+35023706..35029044AIG1 family protein, expressed
LOC_Os03g61900Os.5024.1.S1_at11/113+35029607..35030556expressed protein
LOC_Os03g61910Os.27140.1.S1_a_at11/113+35035881..35037640retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g61920Os.14084.1.S1_at11/113+35039306..35042530electron transfer flavoprotein, alpha subunit containing protein, expressed
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000062molecular_functionacyl-CoA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32203.1.S1_x_at--403--6316Chr10:10470450..10470474 (25 bp)
ATGCTTGCATATTCGTCCATAGGGC
NONE
OsAffx.32203.1.S1_x_at--127--2715Chr10:10470544..10470568 (25 bp)
ATATGCTTTTCTATATCTCCATGAA
NONE
OsAffx.32203.1.S1_x_at--423--52515Chr10:10470566..10470590 (25 bp)
GAATCTAGGAACTTTTGCTTGCATT
NONE
OsAffx.32203.1.S1_x_at--459--71514Chr08:9251249..9251273 (25 bp)
GTCTACGTACCGGAACTGATAACAT
NONE
OsAffx.32203.1.S1_x_at--468--55713Chr08:9251298..9251322 (25 bp)
GAAAGATCCTTTTTTGGCTCTCTCT
NONE
OsAffx.32203.1.S1_x_at--812--101113Chr10:10470680..10470704 (25 bp)
TATGTCTCTTATCCCTAGGAGGCCT
NONE
OsAffx.32203.1.S1_x_at--972--38113Chr10:10470707..10470731 (25 bp)
CTCCACTAGCAGGTTTCTTCGGAAA
NONE
OsAffx.32203.1.S1_x_at--249--24314Chr10:10470729..10470753 (25 bp)
AAAACTCTATCTATTCTGGTGTGGA
NONE
OsAffx.32203.1.S1_x_at--177--50114Chr10:10470760..10470784 (25 bp)
GCAGGCCTATATTTCTTGGTTTCAA
NONE
OsAffx.32203.1.S1_x_at--65--31116Chr10:10470783..10470807 (25 bp)
AATAGGACTCCTTACGAGCGTTCTT
NONE
OsAffx.32203.1.S1_x_at--560--18715Chr10:10470796..10470820 (25 bp)
ACGAGCGTTCTTTCTATCTACTATT
NONE
Target Sequence 
ATGCTTGCATATTCGTCCATAGGGCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGATGGATATGC
AAGCATGATAACTTATATGCTTTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTGTATTATTTGGTCTACGTA
CCGGAACTGATAACATTCGAGATTATGCAGGATTATACACGAAAGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTC
TTATCCCTAGGAGGCCTTCCTCCACTAGCAGGTTTCTTCGGAAAACTCTATCTATTCTGGTGTGGATGGCAAGCAGGCCT
ATATTTCTTGGTTTCAATAGGACTCCTTACGAGCGTTCTTTCTATCTACTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32203.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis