Browse Element(s) Details


Os.10612.1.S1_at

Description gb:AK121063.1
DB_XREF= gi:37990686
TID=Os.10612.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058L21, full insert sequence.
FL= gb:AK121063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6196011/11Ferredoxin-3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61910Os.27140.1.S1_a_at11/113+35035881..35037640retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g61920Os.14084.1.S1_at11/113+35039306..35042530electron transfer flavoprotein, alpha subunit containing protein, expressed
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0009767biological_processphotosynthetic electron transport
GO:0009570cellular_componentchloroplast stroma
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10612.1.S1_at--94--2751Chr03:35062692..35062716 (25 bp)
AAGAAGCTTGACGTCTCGGCAATGG
LOC_Os03g61960
Os.10612.1.S1_at--954--3771Chr03:35062706..35062730 (25 bp)
CTCGGCAATGGCTACCTACAAGGTT
LOC_Os03g61960
Os.10612.1.S1_at--55--6771Chr03:35062728..35062752 (25 bp)
GTTAAGCTCATCACACCAGAAGGGC
LOC_Os03g61960
Os.10612.1.S1_at--863--1871Chr03:35062759..35062783 (25 bp)
ACGAGTTCGAGGCTCCGGATGACAC
LOC_Os03g61960
Os.10612.1.S1_at--956--6311Chr03:35062776..35062800 (25 bp)
GATGACACCTACATCCTTGATGCCG
LOC_Os03g61960
Os.10612.1.S1_at--335--4991Chr03:35062845..35062869 (25 bp)
GCATGCTCTACCTGTGCCGGTAAGA
LOC_Os03g61960
Os.10612.1.S1_at--1067--5831Chr03:35062887..35062911 (25 bp)
GACCAGTCGGATGGATCATTCCTTG
LOC_Os03g61960
Os.10612.1.S1_at--328--8311Chr03:35062932..35062956 (25 bp)
GGCTATGTGCTGACATGTGTCTCCT
LOC_Os03g61960
Os.10612.1.S1_at--428--2411Chr03:35063046..35063070 (25 bp)
AAAACTCTCAATGTCGTCGGCAAGG
LOC_Os03g61960
Os.10612.1.S1_at--126--8231Chr03:35063064..35063088 (25 bp)
GGCAAGGTCCATCGTGTGTACCAGT
LOC_Os03g61960
Os.10612.1.S1_at--23--7451Chr03:35063079..35063103 (25 bp)
GTGTACCAGTTGTCTCAACTCTCAA
LOC_Os03g61960
Target Sequence 
AAGAAGCTTGACGTCTCGGCAATGGCTACCTACAAGGTTAAGCTCATCACACCAGAAGGGCAAGAGCACGAGTTCGAGGC
TCCGGATGACACCTACATCCTTGATGCCGCCGAGACCGCTGGAGTAGAGCTTCCCTACTCATGCCGTGCTGGAGCATGCT
CTACCTGTGCCGGTAAGATCGAGGCTGGCTCCGTCGACCAGTCGGATGGATCATTCCTTGATGATGCGCAGCAGGAAGAA
GGCTATGTGCTGACATGTGTCTCCTACCCTAAGTCCGACTGCGTCATCCATACTCACAAGGAAGGAGACCTTTACTAAGG
TGCTTTTTCTTGAAAATTTTCTGCCAAGAGGCAAAAAAACTCTCAATGTCGTCGGCAAGGTCCATCGTGTGTACCAGTTG
TCTCAACTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis