Browse Element(s) Details


Os.8517.1.S1_at

Description gb:AK061174.1
DB_XREF= gi:32971192
TID=Os.8517.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C03, full insert sequence.
FL= gb:AK061174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6201011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62050OsAffx.13577.1.S1_at11/113+35095123..35096236hypothetical protein
LOC_Os03g62060Os.10435.1.S1_at10/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62060Os.54455.1.S1_at1/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62070Os.19742.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62070Os.10435.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8517.1.S1_at--73--8931Chr03:35079537..35079561 (25 bp)
TGACGCTGTCGCTGCGTAACCCGAA
LOC_Os03g62010
Os.8517.1.S1_at--169--8571Chr03:35079549..35079573 (25 bp)
TGCGTAACCCGAACCTGTACCGCGG
LOC_Os03g62010
Os.8517.1.S1_at--925--4631Chr03:35079647..35079671 (25 bp)
GCGTTCTACCATCGGCCGAGGAAGA
LOC_Os03g62010
Os.8517.1.S1_at--494--911Chr03:35079788..35079812 (25 bp)
AGGCTGGACACGGTGATGCAGTACA
LOC_Os03g62010
Os.8517.1.S1_at--852--4031Chr03:35079894..35079918 (25 bp)
CGTTCCAGAGGACCAAGTGCACCGT
LOC_Os03g62010
Os.8517.1.S1_at--706--2791Chr03:35079908..35079932 (25 bp)
AAGTGCACCGTCCTCCGGGCCAAGA
LOC_Os03g62010
Os.8517.1.S1_at--178--5311Chr03:35079931..35079955 (25 bp)
GAAGTCCGGATGCTAGCTAACCTAC
LOC_Os03g62010
Os.8517.1.S1_at--505--9991Chr03:35079944..35079968 (25 bp)
TAGCTAACCTACCTACCTGCAATTT
LOC_Os03g62010
Os.8517.1.S1_at--979--1751Chr03:35079958..35079982 (25 bp)
ACCTGCAATTTTCTCGAGATTTCAG
LOC_Os03g62010
Os.8517.1.S1_at--546--4711Chr03:35080006..35080030 (25 bp)
GCTGGAGATTGTTGCCATGTATGAT
LOC_Os03g62010
Os.8517.1.S1_at--793--7471Chr03:35080079..35080103 (25 bp)
GTGTGTACTGTGTACTGCTACTCAT
LOC_Os03g62010
Target Sequence 
TGACGCTGTCGCTGCGTAACCCGAACCTGTACCGCGGCATCAGCTACGACCCCGTCGCGGTGGCCTTCTCCTTCAACGGC
ACGCGCTTCGACGAGTCCGCCACCGTGCCGGCGTTCTACCATCGGCCGAGGAAGACGGCGACGTTCCACGTCACGGTGGG
CGGCGCGGGCAAGCCCGTCCCCAAGCTCACCGCGGCGGGGGTGGCGGCGTTCAGGGCGGAGAACGCGACGGGGAGGTTCG
AGGTGGAGGTGAGGCTGGACACGGTGATGCAGTACAAGGCGAGGAAGGCGCGGTGCCCGCTCGCCGTCATCTGCCCGNTG
CAGCTGCAGCTCGTCGACCCGGACGTCGCCGCCACCGCGTTCCAGAGGACCAAGTGCACCGTCCTCCGGGCCAAGAAGTC
CGGATGCTAGCTAACCTACCTACCTGCAATTTTCTCGAGATTTCAGTTTTCTTTTGCTTGTTCTTGCTTGCTGGAGATTG
TTGCCATGTATGATTGGAAGATTGCATTTTGGATTAGAAATTNTAAGATTGGTTATTGTGTAGTGTGTACTGTGTACTGC
TACTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis