Browse Element(s) Details


OsAffx.13576.1.S1_s_at

Description tigr:9631.m06125
TID=OsAffx.13576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6204011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62050OsAffx.13577.1.S1_at11/113+35095123..35096236hypothetical protein
LOC_Os03g62060Os.10435.1.S1_at10/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62060Os.54455.1.S1_at1/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62070Os.19742.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62070Os.10435.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62080Os.52608.1.S1_at11/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62080OsAffx.22644.1.S1_at1/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62090Os.4857.1.S1_at10/113+35116690..35122248Cellulose synthase A catalytic subunit 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13576.1.S1_s_at--1075--10411Chr03:35091358..35091382 (25 bp)
TTATGGCAGCCAGCATCAATCATCT
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--442--2471Chr03:35091400..35091424 (25 bp)
AACACTTGCCGCATCTTCCTTTGGT
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--821--10231Chr03:35091419..35091443 (25 bp)
TTTGGTTGGCCTTCAGGGACAGACT
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--275--7631Chr03:35091434..35091458 (25 bp)
GGGACAGACTTAACACCAATGCAAA
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--891--791Chr03:35091474..35091498 (25 bp)
ATGGGCTATTGATCCACACTGCAGC
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--209--5071Chr03:35091494..35091518 (25 bp)
GCAGCTCTTGCCCAACTATTGAAAC
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--580--2091Chr03:35091527..35091551 (25 bp)
ACATCATTCTTCACTGCAAGCTAGC
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--41--5171Chr03:35091542..35091566 (25 bp)
GCAAGCTAGCCGACGAAGTTTGGAA
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--686--2511Chr03:35091604..35091628 (25 bp)
AACATTCAGGCCTTCGTCGAGCTAA
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--310--1451Chr03:35091653..35091677 (25 bp)
AGAAGCTAGGTTGGCCAGCGTGCTT
LOC_Os03g62040
OsAffx.13576.1.S1_s_at--164--3411Chr03:35091680..35091704 (25 bp)
CAGCTTGTGCACATGGCCTGTGGAA
LOC_Os03g62040
Target Sequence 
TTATGGCAGCCAGCATCAATCATCTGGAACAAGGCAACCCCCAACACTTGCCGCATCTTCCTTTGGTTGGCCTTCAGGGA
CAGACTTAACACCAATGCAAACAGAGTTCACAAAAAATGGGCTATTGATCCACACTGCAGCTCTTGCCCAACTATTGAAA
CAGCCAACCACATCATTCTTCACTGCAAGCTAGCCGACGAAGTTTGGAAAAAGCTAAACCTTCATATGCAAGCAATGAGC
AGTGCCAACATTCAGGCCTTCGTCGAGCTAATCTTGGATAATATGCCGGAACAACAGAAGCTAGGTTGGCCAGCGTGCTT
CGCAGCTTGTGCACATGGCCTGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13576.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis