Browse Element(s) Details


Os.52608.1.S1_at

Description gb:AK068294.1
DB_XREF= gi:32978312
TID=Os.52608.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013148J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148J04, full insert sequence.
FL= gb:AK068294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6208011/11mRNA decapping enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62050OsAffx.13577.1.S1_at11/113+35095123..35096236hypothetical protein
LOC_Os03g62060Os.10435.1.S1_at10/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62060Os.54455.1.S1_at1/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62070Os.19742.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62070Os.10435.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62080Os.52608.1.S1_at11/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62080OsAffx.22644.1.S1_at1/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62090Os.4857.1.S1_at10/113+35116690..35122248Cellulose synthase A catalytic subunit 6, putative, expressed
LOC_Os03g62100OsAffx.13578.1.S1_at11/113+35128356..35129480Myb-like DNA-binding domain containing protein
LOC_Os03g62110Os.16788.1.S1_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.49772.1.S1_s_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.57290.1.S1_at10/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62120OsAffx.13579.1.S1_at11/113+35137617..35140311DnaJ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52608.1.S1_at--355--10511Chr03:35108358..35108382 (25 bp)
TTCAACCACCATATGGCATGCCATT
LOC_Os03g62080
Os.52608.1.S1_at--787--10451Chr03:35108295..35108319 (25 bp)
TTACCTCGGGAGTGTCTTATGGCCG
LOC_Os03g62080
Os.52608.1.S1_at--816--871Chr03:35108277..35108301 (25 bp)
ATGGCCGCCCAGTGATCACAAGAGA
LOC_Os03g62080
Os.52608.1.S1_at--885--991Chr03:35108244..35108268 (25 bp)
AGGATGTGCTACTGAGTCTTTGTCA
LOC_Os03g62080
Os.52608.1.S1_at--1116--6711Chr03:35107886..35107910 (25 bp)
GTTACCTTGAGGAGACTGTCACTAC
LOC_Os03g62080
Os.52608.1.S1_at--776--3852Chr03:35107871..35107895 (25 bp)
CTGTCACTACCACAGGCTTTAGTTT
LOC_Os03g62080
Os.52608.1.S1_at--227--2671Chr03:35107812..35107836 (25 bp)
AAGCCTGTAGACTAACGTACGTGCA
LOC_Os03g62080
Os.52608.1.S1_at--314--931Chr03:35107690..35107714 (25 bp)
AGGCAGAAACCTTGCATTTCGCCTA
LOC_Os03g62080
Os.52608.1.S1_at--320--9071Chr03:35107678..35107702 (25 bp)
TGCATTTCGCCTAATACCAACTGGA
LOC_Os03g62080
Os.52608.1.S1_at--83--10271Chr03:35107647..35107671 (25 bp)
TTTGCACGTTTTTGTAACGGCCTGT
LOC_Os03g62080
Os.52608.1.S1_at--964--2551Chr03:35107632..35107656 (25 bp)
AACGGCCTGTTTTTGGGCAGCTAGT
LOC_Os03g62080
Target Sequence 
TTCAACCACCATATGGCATGCCATTACTGCAGCCATTTCCACCGCCCAACCCTTCCCCATTTCTTACCTCGGGAGTGTCT
TATGGCCGCCCAGTGATCACAAGAGACCAACTGAAGGATGTGCTACTGAGTCTTTGTCAGAATGATGAATTCATCGATAT
GATATATCGGGAGTTCGTGAAGAGACAGTTACCTTGAGGAGACTGTCACTACCACAGGCTTTAGTTTGTGTAATTGTGTT
TTAGGTAGGCCATTTTTTTCAAAGCCTGTAGACTAACGTACGTGCATTTGACATACCAAAGGTTAGCATAGTTTAGGTCC
AACTATCGACTAGTTTTGAGCAGTATTCTCGGAGCAGAAAAAGTCTTGCTCCAAATACCAGAAAGGCAGAAACCTTGCAT
TTCGCCTAATACCAACTGGAATAGTTTTTGCACGTTTTTGTAACGGCCTGTTTTTGGGCAGCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis