Browse Element(s) Details


Os.57290.1.S1_at

Description gb:AK111243.1
DB_XREF= gi:32996452
TID=Os.57290.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-D03, full insert sequence.
FL= gb:AK111243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6211010/11nicotinate phosphoribosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62070Os.19742.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62070Os.10435.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62080Os.52608.1.S1_at11/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62080OsAffx.22644.1.S1_at1/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62090Os.4857.1.S1_at10/113+35116690..35122248Cellulose synthase A catalytic subunit 6, putative, expressed
LOC_Os03g62100OsAffx.13578.1.S1_at11/113+35128356..35129480Myb-like DNA-binding domain containing protein
LOC_Os03g62110Os.16788.1.S1_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.49772.1.S1_s_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.57290.1.S1_at10/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62120OsAffx.13579.1.S1_at11/113+35137617..35140311DnaJ domain containing protein
LOC_Os03g62130OsAffx.13580.1.S1_at11/113+35141491..35142321DnaJ domain containing protein
LOC_Os03g62140OsAffx.3669.1.S1_at11/113+35144660..35145523DnaJ domain containing protein
LOC_Os03g62150OsAffx.13581.1.S1_at11/113+35146476..35147264DnaJ domain containing protein
LOC_Os03g62160Os.7347.1.S1_at11/113+35147432..35150284expressed protein
LOC_Os03g62160Os.17465.1.S1_x_at1/113+35147432..35150284expressed protein
LOC_Os03g62170Os.24911.1.S1_at10/113+35151821..35157202Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g62180Os.18773.1.S1_at10/113+35158306..35161738lectin protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019358biological_processnicotinate nucleotide salvage
GO:0004516molecular_functionnicotinate phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57290.1.S1_at--778--10331Chr03:35130028..35130052 (25 bp)
TTTAGACGCGTGTTTCCGCTGCTAT
LOC_Os03g62110
Os.57290.1.S1_at--626--9651NONE
TCAGCTCTTAAGCTCGTGCGACGGG
NONE
Os.57290.1.S1_at--768--8111Chr03:35130126..35130150 (25 bp)
GGACGATCGGTTTTGGTGAATGCTC
LOC_Os03g62110
Os.57290.1.S1_at--570--851Chr03:35130167..35130191 (25 bp)
AGGCCCAATTGGTTATTGGTCCTGA
LOC_Os03g62110
Os.57290.1.S1_at--957--7791Chr03:35130184..35130208 (25 bp)
GGTCCTGAGTTTTCGATCTGTGTTA
LOC_Os03g62110
Os.57290.1.S1_at--1096--771Chr03:35130208..35130232 (25 bp)
ATGTGAATTCATGTGCGGTGCGGAT
LOC_Os03g62110
Os.57290.1.S1_at--808--4671Chr03:35130222..35130246 (25 bp)
GCGGTGCGGATTCGAGATTTCCAAC
LOC_Os03g62110
Os.57290.1.S1_at--776--6512Chr03:35130237..35130261 (25 bp)
GATTTCCAACTAGCTTTTTTCTCAA
LOC_Os03g62110
Os.57290.1.S1_at--544--711Chr03:35130266..35130290 (25 bp)
ATGATCCACTTAACTGTAACCACGG
LOC_Os03g62110
Os.57290.1.S1_at--989--7031Chr03:35130281..35130305 (25 bp)
GTAACCACGGGTATTTCGATTCGAG
LOC_Os03g62110
Os.57290.1.S1_at--1064--7011Chr03:35130385..35130409 (25 bp)
GTGAACATAGTGTCCTTTTTAACCT
LOC_Os03g62110
Target Sequence 
TTTAGACGCGTGTTTCCGCTGCTATCCGATCCGTCGTGCTCGTCAGCTCTTAAGCTCGTGCGACGGGGTGGTGATTTAGG
GACAGTGGAGGAGGAGAGGGACGATCGGTTTTGGTGAATGCTCGGATATGGCGTGGAAGAGGCCCAATTGGTTATTGGTC
CTGAGTTTTCGATCTGTGTTATGTGAATTCATGTGCGGTGCGGATTCGAGATTTCCAACTAGCTTTTTTCTCAATTTGAT
GATCCACTTAACTGTAACCACGGGTATTTCGATTCGAGATTTTTCTGTATGCAGATGTTGTTTGAACAACATGTATGTAA
AGTGGTAGATATATGTCATCATAGCTGATGTAATAAAGTGAACATAGTGTCCTTTTTAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis