Browse Element(s) Details


Os.4857.1.S1_at

Description gb:AK100877.1
DB_XREF= gi:32986086
TID=Os.4857.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127C10, full insert sequence.
FL= gb:AK100877.1 gb:AK060814.1 gb:AK101178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6209010/11Cellulose synthase A catalytic subunit 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62050OsAffx.13577.1.S1_at11/113+35095123..35096236hypothetical protein
LOC_Os03g62060Os.10435.1.S1_at10/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62060Os.54455.1.S1_at1/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62070Os.19742.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62070Os.10435.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62080Os.52608.1.S1_at11/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62080OsAffx.22644.1.S1_at1/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62090Os.4857.1.S1_at10/113+35116690..35122248Cellulose synthase A catalytic subunit 6, putative, expressed
LOC_Os03g62100OsAffx.13578.1.S1_at11/113+35128356..35129480Myb-like DNA-binding domain containing protein
LOC_Os03g62110Os.16788.1.S1_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.49772.1.S1_s_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.57290.1.S1_at10/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62120OsAffx.13579.1.S1_at11/113+35137617..35140311DnaJ domain containing protein
LOC_Os03g62130OsAffx.13580.1.S1_at11/113+35141491..35142321DnaJ domain containing protein
LOC_Os03g62140OsAffx.3669.1.S1_at11/113+35144660..35145523DnaJ domain containing protein
LOC_Os03g62150OsAffx.13581.1.S1_at11/113+35146476..35147264DnaJ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4857.1.S1_at--170--10391Chr03:35121700..35121724 (25 bp)
TTTTCATTTTTTCCTCTGTAGATAG
LOC_Os03g62090
Os.4857.1.S1_at--408--191Chr03:35121746..35121770 (25 bp)
ATTTCTTTTGTTCCATGGTGGTAGC
LOC_Os03g62090
Os.4857.1.S1_at--644--6211Chr03:35121803..35121827 (25 bp)
GAGGCTGCGACAACCTTGTGCAGTT
LOC_Os03g62090
Os.4857.1.S1_at--233--4432Chr07:27165279..27165324 (24 bp)
GCCAGTGTTTGATTGTTCAGCATTC
NONE
Os.4857.1.S1_at--1089--1231Chr03:35121919..35121943 (25 bp)
AGTTGCTTGATTCTGCATTGCTCTC
LOC_Os03g62090
Os.4857.1.S1_at--28--951Chr03:35121984..35122008 (25 bp)
AGGAATGGATCTGCCGTCTGGAATA
LOC_Os03g62090
Os.4857.1.S1_at--476--2451Chr03:35122041..35122065 (25 bp)
AAAATATGCCTGAAGGGCTTGTTCA
LOC_Os03g62090
Os.4857.1.S1_at--725--6811Chr03:35122124..35122148 (25 bp)
GTTTTAGTGATTTAGCCCATCCGGT
LOC_Os03g62090
Os.4857.1.S1_at--567--10451Chr03:35122135..35122159 (25 bp)
TTAGCCCATCCGGTGTTGTAATTTG
LOC_Os03g62090
Os.4857.1.S1_at--1041--7771Chr03:35122164..35122188 (25 bp)
GGTGCCCCTTTGTTCAATACTTCAA
LOC_Os03g62090
Os.4857.1.S1_at--381--351NONE
ATAACTGTGGGTGTGCTTCCTTTGT
NONE
Target Sequence 
TTTTCATTTTTTCCTCTGTAGATAGAAACACGAAAAAAAAAACTTGCATTTCTTTTGTTCCATGGTGGTAGCTCAGCCTC
ATATCTGCAATATTGAGCAAACGGGAGGCTGCGACAACCTTGTGCAGTTCGGCCACGAAAAATACAGTGAATGCCAGTGT
TTGATTGTTCAGCATTCTTTATTAGTTTGGTGGAAATTTGATCGGGTGAGCCGAACAGAAAGTTGCTTGATTCTGCATTG
CTCTCCACCATCTACAAAAACTCGGTACTTGTTTCTCAATAAGGCAGGAATGGATCTGCCGTCTGGAATAGAGGAAGATG
CACATTATTTATGTAGCGAGTTAAAATATGCCTGAAGGGCTTGTTCATTCCTTGTTCCTCTTTCTATTTCATTTTTTTGT
CCTTGTTAGAACAAATAGATCTCTAGTTTTAGTGATTTAGCCCATCCGGTGTTGTAATTTGTAAAGGTGCCCCTTTGTTC
AATACTTCAATTGCGTAATGTCCCNGATAACTGTGGGTGTGCTTCCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis