Browse Element(s) Details


Os.19742.1.S1_at

Description gb:AK101613.1
DB_XREF= gi:32986822
TID=Os.19742.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) actin (OSJNBa0005K07.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052E12, full insert sequence.
FL= gb:AK070531.1 gb:AK101613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3665011/11Actin-2, putative, expressed
LOC_Os03g620701/11IAA-amino acid hydrolase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36610NANA10+19253665..19253934hypothetical protein
LOC_Os10g36620Os.46597.2.S1_at7/1110+19264676..19265368expressed protein
LOC_Os10g36634OsAffx.30691.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36634OsAffx.20209.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36650Os.19742.1.S1_at11/1110+19277241..19281153Actin-2, putative, expressed
LOC_Os10g36660OsAffx.20208.1.S1_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36660OsAffx.20208.1.S1_x_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36670OsAffx.18540.1.S1_at11/1110+19285544..19286365expressed protein
LOC_Os10g36670OsAffx.18540.1.S1_x_at11/1110+19285544..19286365expressed protein
LOC_Os10g36680OsAffx.20207.1.S1_at11/1110+19287802..19288929membrane associated salt-inducible protein, putative
LOC_Os10g36690Os.5030.1.S1_at11/1110+19291938..19296510dehydration-responsive family protein, putative, expressed
LOC_Os10g36699NANA10+19301947..19303104expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0009850biological_processauxin metabolism
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
GO:0010210molecular_functionIAA-Phe conjugate hydrolase activity
GO:0010211molecular_functionIAA-Leu conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19742.1.S1_at--648--10811Chr10:19280478..19280502 (25 bp)
TTGTCGCTCCGCCAGAGAGGAAGTA
LOC_Os10g36650
Os.19742.1.S1_at--441--6171Chr10:19280517..19280541 (25 bp)
GAGGATCAATCCTTGCATCTCTGAG
LOC_Os10g36650
Os.19742.1.S1_at--412--7551Chr10:19280718..19280742 (25 bp)
GTGGCCTAGCTGTATCTTTCATGAG
LOC_Os10g36650
Os.19742.1.S1_at--448--5951Chr10:19280740..19280764 (25 bp)
GAGAACCCCTTGTCTATTAGCATTA
LOC_Os10g36650
Os.19742.1.S1_at--716--3591Chr10:19280760..19280784 (25 bp)
CATTAGCTGGCTGTTTCATGGACAA
LOC_Os10g36650
Os.19742.1.S1_at--1009--32Chr10:19280789..19280813 (25 bp)
ATTGTTGGGTCTGATGGCTTGTCTA
LOC_Os10g36650
Os.19742.1.S1_at--771--4931Chr10:19280805..19280829 (25 bp)
GCTTGTCTATGGGTGTATCTACTCT
LOC_Os10g36650
Os.19742.1.S1_at--172--6911Chr10:19280819..19280843 (25 bp)
GTATCTACTCTGATTAGCTCCGGTT
LOC_Os10g36650
Os.19742.1.S1_at--758--1591Chr10:19280834..19280858 (25 bp)
AGCTCCGGTTTTTGTGTATGCCAAT
LOC_Os10g36650
Os.19742.1.S1_at--703--8791Chr10:19280979..19281003 (25 bp)
TGTTCATCCTCTTTGTCATGAGCTT
LOC_Os10g36650
Os.19742.1.S1_at--159--6971Chr10:19281100..19281124 (25 bp)
GTAGCTTTTTGTTCATTTTCAGGGT
LOC_Os10g36650
Target Sequence 
TTGTCGCTCCGCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAGCAGATG
TGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTAT
CTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATTGTTGGGTCTGATGGCTTGTCT
ATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAA
CATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAACTTTTCTAGTACCGCAANNNNNANNNNNNAANN
NNGCAATGTTCATCCTCTTTGTCATGAGCTTGTACTACTTGAAGATACTATGCCCCTGTTTGGGGAGGTCGAGATTTTAA
GAAGTAGCTAGCTAGTGAAAATATGAAAATGCTAGGATTCCCAAATTGTAGCTTTTTGTTCATTTTCAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis