Browse Element(s) Details


Os.5030.1.S1_at

Description gb:AK100601.1
DB_XREF= gi:32985810
TID=Os.5030.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0005K07.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107D05, full insert sequence.
FL= gb:AK100601.1 gb:AK073237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3669011/11dehydration-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36634OsAffx.30691.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36634OsAffx.20209.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36650Os.19742.1.S1_at11/1110+19277241..19281153Actin-2, putative, expressed
LOC_Os10g36660OsAffx.20208.1.S1_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36660OsAffx.20208.1.S1_x_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36670OsAffx.18540.1.S1_at11/1110+19285544..19286365expressed protein
LOC_Os10g36670OsAffx.18540.1.S1_x_at11/1110+19285544..19286365expressed protein
LOC_Os10g36680OsAffx.20207.1.S1_at11/1110+19287802..19288929membrane associated salt-inducible protein, putative
LOC_Os10g36690Os.5030.1.S1_at11/1110+19291938..19296510dehydration-responsive family protein, putative, expressed
LOC_Os10g36699NANA10+19301947..19303104expressed protein
LOC_Os10g36710Os.20211.1.S1_at11/1110+19311132..19316287CDPK-related protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5030.1.S1_at--332--7651Chr10:19295926..19295950 (25 bp)
GGGAGAGCCGCATCTTGGACCATGA
LOC_Os10g36690
Os.5030.1.S1_at--987--8511Chr10:19295941..19295965 (25 bp)
TGGACCATGAGGACGGGCCCTTCAA
LOC_Os10g36690
Os.5030.1.S1_at--739--10431Chr10:19295961..19295985 (25 bp)
TTCAACCCGGAGAAGGTCCTTGTGG
LOC_Os10g36690
Os.5030.1.S1_at--150--7271Chr10:19295976..19296000 (25 bp)
GTCCTTGTGGCGGTCAAGACATACT
LOC_Os10g36690
Os.5030.1.S1_at--312--9451Chr10:19296058..19296082 (25 bp)
TCGGCTACCTCTCTGAAGACTGAAG
LOC_Os10g36690
Os.5030.1.S1_at--275--4211Chr10:19296093..19296117 (25 bp)
CCCCGATTGTTTTCAGAGCTGTGAT
LOC_Os10g36690
Os.5030.1.S1_at--460--8011Chr10:19296127..19296151 (25 bp)
GGAGTTTTGCCATTTCGGTGTAACA
LOC_Os10g36690
Os.5030.1.S1_at--105--1271Chr10:19296159..19296183 (25 bp)
AGATATCATCTGGTCACTTGTTTTC
LOC_Os10g36690
Os.5030.1.S1_at--1149--5111Chr10:19296295..19296319 (25 bp)
GCAAATCTTGCATAGGTTCCTGCCC
LOC_Os10g36690
Os.5030.1.S1_at--518--6831Chr10:19296322..19296346 (25 bp)
GTTTCACGCATGGAGCAGACAGCAG
LOC_Os10g36690
Os.5030.1.S1_at--401--1211Chr10:19296441..19296465 (25 bp)
AGTTTATCTGTGTTAGCTCTTGGAA
LOC_Os10g36690
Target Sequence 
GGGAGAGCCGCATCTTGGACCATGAGGACGGGCCCTTCAACCCGGAGAAGGTCCTTGTGGCGGTCAAGACATACTGGACT
GCTGATGAATCAGAGCAGCACTAGCACACTGCACACAGCACAGAACACAGGCTCGGCTACCTCTCTGAAGACTGAAGAAG
TCTGAACCCCCGATTGTTTTCAGAGCTGTGATGATGGCATCGGAGTTTTGCCATTTCGGTGTAACATAACAGAAGATATC
ATCTGGTCACTTGTTTTCTTCCTCCTTTCGCTAATTCTTTCTATATCAAAGGAAAAGTTATGGATGGTTTTTGGGGTGAG
ATTGGGCATGGTTGGATGATACATGAGTTTGTTAGCAAGGGGAAGAAATGCAAATCTTGCATAGGTTCCTGCCCCAGTTT
CACGCATGGAGCAGACAGCAGAGGATAGGTTTTTTAGCTTGTAATATGATGGCGTCCAAGTATCCAACAGACACTGTTAA
TCTATATTGAGGTTAACTAAGATAGGTATTTATCTAGTTTATCTGTGTTAGCTCTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis