Browse Element(s) Details


Os.20211.1.S1_at

Description gb:NM_197303.1
DB_XREF= gi:37535965
TID=Os.20211.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.20211 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative kinase (OSJNBa0005K07.3), mRNA.
PROD=putative kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3671011/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36670OsAffx.18540.1.S1_at11/1110+19285544..19286365expressed protein
LOC_Os10g36670OsAffx.18540.1.S1_x_at11/1110+19285544..19286365expressed protein
LOC_Os10g36680OsAffx.20207.1.S1_at11/1110+19287802..19288929membrane associated salt-inducible protein, putative
LOC_Os10g36690Os.5030.1.S1_at11/1110+19291938..19296510dehydration-responsive family protein, putative, expressed
LOC_Os10g36699NANA10+19301947..19303104expressed protein
LOC_Os10g36710Os.20211.1.S1_at11/1110+19311132..19316287CDPK-related protein kinase, putative, expressed
LOC_Os10g36720OsAffx.19542.3.S1_x_at10/1110+19326578..19330800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36729OsAffx.3688.1.S1_x_at1/1110+19335623..19339255hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20211.1.S1_at--714--3651Chr10:19311849..19312013 (25 bp)
CTTCAGGATGGCTCTTTTACAAAAC
LOC_Os10g36710
Os.20211.1.S1_at--712--1131Chr10:19311625..19311649 (25 bp)
AGTCCTTACCAACTTGAGGCTTTAT
LOC_Os10g36710
Os.20211.1.S1_at--602--10251Chr10:19311562..19311586 (25 bp)
TTTGAGCAGGAAGGCAACCGTCCCA
LOC_Os10g36710
Os.20211.1.S1_at--24--5171Chr10:19311549..19311573 (25 bp)
GCAACCGTCCCATCACAATTGAGGA
LOC_Os10g36710
Os.20211.1.S1_at--751--6871Chr10:19311408..19311432 (25 bp)
GTATTCTATCGTCCGTGACTGGATT
LOC_Os10g36710
Os.20211.1.S1_at--828--3991Chr10:19311395..19311419 (25 bp)
CGTGACTGGATTAGACCGGCTGATG
LOC_Os10g36710
Os.20211.1.S1_at--139--1391Chr10:19311383..19311407 (25 bp)
AGACCGGCTGATGGCAAGCTTAGCT
LOC_Os10g36710
Os.20211.1.S1_at--106--4451Chr10:19311283..19311307 (25 bp)
GCCTTGTTTGCTTGAATAGCTTCCA
LOC_Os10g36710
Os.20211.1.S1_at--1016--291Chr10:19311268..19311292 (25 bp)
ATAGCTTCCATTGCTTTCATTCATG
LOC_Os10g36710
Os.20211.1.S1_at--1005--8011Chr10:19311237..19311261 (25 bp)
GGAGGGATTGCTGCTGTTTTGCCTC
LOC_Os10g36710
Os.20211.1.S1_at--6--9531Chr10:19311214..19311238 (25 bp)
TCTCTTTTTCGTGGCTTAGCTTGTA
LOC_Os10g36710
Target Sequence 
CTTCAGGATGGCTCTTTTACAAAACTCTNCAGNTGCTATGAAGGAATCCAGAGCCCNTGATATCTTGAATGCGTTGGAGC
CNCTTGCCTACAGAAGAATGGACTTTGAGGAGTTCCGGGCNGCGACAATCAGTCCTTACCAACTTGAGGCTTTATCNCGG
TGGGAAGAAATAGCTGGCNCTGCGTTTGAGTACTTTGAGCAGGAAGGCAACCGTCCCATCACAATTGAGGAGCTGGCNCN
GGAGATGAATCTTTNTTNCGCGGNGTATTCTATCGTCCGTGACTGGATTAGACCGGCTGATGGCAAGCTTAGCTTTNTAG
GTTATACCAAATTTTTGCATGGATTGACGATGCGAAGTAGCAACGCGAGGCGGCNCCNTTAAATTTTTTGCCTTGTTTGC
TTGAATAGCTTCCATTGCTTTCATTCATGGGAGTNGGAGGGATTGCTGCTGTTTTGCCTCTCTTTTTCGTGGCTTAGCTT
GTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis