Browse Element(s) Details


OsAffx.3688.1.S1_x_at

Description tigr:9631.m06341
TID=OsAffx.3688.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g367291/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36710Os.20211.1.S1_at11/1110+19311132..19316287CDPK-related protein kinase, putative, expressed
LOC_Os10g36720OsAffx.19542.3.S1_x_at10/1110+19326578..19330800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36729OsAffx.3688.1.S1_x_at1/1110+19335623..19339255hypothetical protein
LOC_Os10g36740OsAffx.30693.1.S1_at10/1110+19341853..19343977Cytochrome P450 family protein
LOC_Os10g36750Os.46646.1.S1_x_at11/1110+19346385..19347071hypothetical protein
LOC_Os10g36760Os.8008.1.S1_a_at11/1110+19347504..19352784prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36770OsAffx.20203.1.S1_at7/1110+19353705..19354109hypothetical protein
LOC_Os10g36780Os.46474.2.S1_x_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36780Os.46474.1.S1_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3688.1.S1_x_at--696--4211Chr03:36074124..36074148 (25 bp)
CCGCCGCGGCAGATGAAACAACTAA
NONE
OsAffx.3688.1.S1_x_at--393--8972Chr08:4959106..4959127 (22 bp)
TGAAACAACTAACCGACCATCGCTG
NONE
OsAffx.3688.1.S1_x_at--20--2472Chr08:4959106..4959129 (24 bp)
AACAACTAACCGACCATCGCTGCTT
NONE
OsAffx.3688.1.S1_x_at--233--7571Chr03:36074169..36074369 (25 bp)
GGGCGGAGCTACTCTGCCCCTGGCT
NONE
OsAffx.3688.1.S1_x_at--1031--51Chr03:36074544..36074568 (25 bp)
ATTGACGCCGTGTTCAACCCCGAAT
NONE
OsAffx.3688.1.S1_x_at--772--9711Chr03:36074557..36074577 (21 bp)
TCAACCCCGAATGGCGCCGTAGGTG
NONE
OsAffx.3688.1.S1_x_at--177--4013Chr08:4959466..4959486 (21 bp)
CGTAGGTGACCAGGCGCTGTACAAT
NONE
OsAffx.3688.1.S1_x_at--81--3391Chr03:36074750..36074770 (21 bp)
CAGCCGCCGACGTTCGGGCAGCGTT
NONE
OsAffx.3688.1.S1_x_at--1149--6692Chr08:4959490..4959625 (25 bp)
GTTCGGGCAGCGTTGGAAACAACTG
NONE
OsAffx.3688.1.S1_x_at--1022--6572Chr08:4959612..4959676 (25 bp)
GTTGGAAACAACTGCCTGCCTGCCG
NONE
OsAffx.3688.1.S1_x_at--1134--4015Chr09:14831429..14831449 (21 bp)
CGTCTCGGCCCGTCGAAGAAGAGAG
NONE
Target Sequence 
CCGCCGCGGCAGATGAAACAACTAACCGACCATCGCTGCTTCCAGGGGCGGAGCTACTCTGCCCCTGGCTGCTCCGCCTG
TCTGCTACGCCCGTCGACCGCTCGCCGCCGCGCTCGCCCGCCCCCACCCCCGCCGATGGGAGCGAGGCGGCCGGCCGCGC
CGACGTGAGAGGGGCAGAGGCGACGGTGGCGGCGCTGACGGGTTCCTTCCCCTGTCGCTGGTCGCTGACCGGTCGGGGGA
CGACATTGACGCCGTGTTCAACCCCGAATGGCGCCGTAGGTGACCAGGCGCTGTACAATGGGTTCGGGGCCGCCGGAATG
CATGGCGCTGCCGTCATGCAGCCGCCGACGTTCGGGCAGCGTTGGAAACAACTGCCTGCCTGCCGCCTCCGCGGCGCTCG
TCCGCCGTCGCCGCGCTCGCCTACCCCCGCCGCTCATGCCTGCTTCGCTTGCCACCGCTGCGCTAGCCCGCCGTCGCCCC
GCCCGTCTCGGCCCGTCGAAGAAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3688.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis