Browse Element(s) Details


Os.46474.2.S1_x_at

Description gb:NM_197310.1
DB_XREF= gi:37535979
TID=Os.46474.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46474 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative serine peptidase (OSJNBa0055O03.8), mRNA.
PROD=putative serine peptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3678011/11prolyl carboxypeptidase like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36729OsAffx.3688.1.S1_x_at1/1110+19335623..19339255hypothetical protein
LOC_Os10g36740OsAffx.30693.1.S1_at10/1110+19341853..19343977Cytochrome P450 family protein
LOC_Os10g36750Os.46646.1.S1_x_at11/1110+19346385..19347071hypothetical protein
LOC_Os10g36760Os.8008.1.S1_a_at11/1110+19347504..19352784prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36770OsAffx.20203.1.S1_at7/1110+19353705..19354109hypothetical protein
LOC_Os10g36780Os.46474.2.S1_x_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36780Os.46474.1.S1_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36800Os.20602.2.S1_x_at11/1110+19370747..19372927hAT family dimerisation domain containing protein
LOC_Os10g36810Os.46787.1.S1_at11/1110+19374212..19383870Plus-3 domain containing protein, expressed
LOC_Os10g36830OsAffx.30694.1.S1_at11/1110+19386195..19390452hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005764cellular_componentlysosome
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46474.2.S1_x_at--203--5391Chr10:19360000..19360024 (25 bp)
GAAGAATACGACTCCTGATGATACT
LOC_Os10g36780
Os.46474.2.S1_x_at--591--10051Chr10:19360148..19360170 (23 bp)
TAGTTCTAGACTTTGGTGGTTCCAA
LOC_Os10g36780
Os.46474.2.S1_x_at--1062--4431Chr10:19360186..19360210 (25 bp)
GCCTATTTTCAAGTGGCACCCAAAA
LOC_Os10g36780
Os.46474.2.S1_x_at--1--2391Chr10:19360209..19360233 (25 bp)
AAACGATAGCATTCGCTCTACAGAG
LOC_Os10g36780
Os.46474.2.S1_x_at--689--7691Chr10:19360579..19360602 (24 bp)
GGGTACCATTTGGACCTATGCAGAA
LOC_Os10g36780
Os.46474.2.S1_x_at--377--7431Chr10:19360618..19360642 (25 bp)
GTGTTTATCCTGATGTGTTCATGAC
LOC_Os10g36780
Os.46474.2.S1_x_at--935--6191Chr10:19360657..19360975 (25 bp)
GAGGCACAAGAATTGCTGCTTCTAA
LOC_Os10g36780
Os.46474.2.S1_x_at--330--1111Chr10:19360979..19361003 (25 bp)
AGTGTTCACAAATGGCTCTCAAGAT
LOC_Os10g36780
Os.46474.2.S1_x_at--387--8471Chr10:19361007..19361031 (25 bp)
TGGCGCCATGCCTCGAAACAGAAAT
LOC_Os10g36780
Os.46474.2.S1_x_at--163--3171Chr10:19361200..19361224 (25 bp)
AATTGCGGACATGGCACTGATCTGA
LOC_Os10g36780
Os.46474.2.S1_x_at--259--2891Chr10:19361806..19361829 (24 bp)
AAGGTGACCCTTCAAATTGCTCATC
LOC_Os10g36780
Target Sequence 
GAAGAATACGACTCCTGATGATACTAGTTCTAGACTTTGGTGGTTCCAAGTTTGCAGTGAGGTTGCCTATTTTCAAGTGG
CACCCAAAAACGATAGCATTCGCTCTACAGAGATCAATACAGGGTACCATTTGGACCTATGCAGAAATGTCTTTGGTGAA
NGGTGTTTATCCTGATGTGTTCATGACAAACTTGTATTACGGAGGCACAAGAATTGCTGCTTCTAAAATAGTGTTCACAA
ATGGCTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATATGCCATCATACATAATCAAATGTAGA
AATTGCGGACATGGCACTGATCTGAGAGGATGCCCCCAACTCCCTTTCAGGATTGAAGGTGACCCTTCAAATTGCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46474.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis