Browse Element(s) Details


OsAffx.20203.1.S1_at

Description tigr:9638.m03279
TID=OsAffx.20203.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g367707/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36720OsAffx.19542.3.S1_x_at10/1110+19326578..19330800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36729OsAffx.3688.1.S1_x_at1/1110+19335623..19339255hypothetical protein
LOC_Os10g36740OsAffx.30693.1.S1_at10/1110+19341853..19343977Cytochrome P450 family protein
LOC_Os10g36750Os.46646.1.S1_x_at11/1110+19346385..19347071hypothetical protein
LOC_Os10g36760Os.8008.1.S1_a_at11/1110+19347504..19352784prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36770OsAffx.20203.1.S1_at7/1110+19353705..19354109hypothetical protein
LOC_Os10g36780Os.46474.2.S1_x_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36780Os.46474.1.S1_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36800Os.20602.2.S1_x_at11/1110+19370747..19372927hAT family dimerisation domain containing protein
LOC_Os10g36810Os.46787.1.S1_at11/1110+19374212..19383870Plus-3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20203.1.S1_at--472--871Chr10:19354272..19354296 (25 bp)
ATGGCCCCTGACTGCGTCTTGCTCG
NONE
OsAffx.20203.1.S1_at--311--1951Chr10:19354262..19354286 (25 bp)
ACTGCGTCTTGCTCGACCGCTACGT
NONE
OsAffx.20203.1.S1_at--448--8111Chr10:19354178..19354202 (25 bp)
GGACGACCTCAGAGACGGGATCGCC
NONE
OsAffx.20203.1.S1_at--805--9971Chr10:19354150..19354174 (25 bp)
TACCTGCGTGCCATGAGGCCGCGCG
NONE
OsAffx.20203.1.S1_at--971--7191Chr10:19354068..19354092 (25 bp)
GTCGTCGGATGACGATCCCCTCGTC
LOC_Os10g36770
OsAffx.20203.1.S1_at--641--9411Chr10:19354048..19354072 (25 bp)
TCGTCCCGCAGTTCGGGCGGCAGAT
LOC_Os10g36770
OsAffx.20203.1.S1_at--1059--3931Chr10:19353810..19353834 (25 bp)
CGGCGGATTCATGGATGGCCACAGT
LOC_Os10g36770
OsAffx.20203.1.S1_at--570--831Chr10:19353800..19353824 (25 bp)
ATGGATGGCCACAGTGTACTACCAC
LOC_Os10g36770
OsAffx.20203.1.S1_at--335--8451Chr10:19353794..19353818 (25 bp)
GGCCACAGTGTACTACCACCGTCGA
LOC_Os10g36770
OsAffx.20203.1.S1_at--311--851Chr10:19353747..19353771 (25 bp)
ATGGACACTCGATCTACAGGATGAT
LOC_Os10g36770
OsAffx.20203.1.S1_at--713--9531Chr10:19353735..19353759 (25 bp)
TCTACAGGATGATCATTCGACGTCA
LOC_Os10g36770
Target Sequence 
ATGGCCCCTGACTGCGTCTTGCTCGACCGCTACGTCACCTTCCTCGACGACCCCGCACCGGCAAGCGACGAGGTCGATCG
CCGGCGGCGAACCCGGACGACCTCAGAGACGGGATCGCCGCCTACCTGCGTGCCATGAGGCCGCGCGCGCAGGTGGAGAG
AATCCCCCGCGGGTCACCTACCTCGCCATGGTGCGGCCGCCGCCGTCGTCGGATGACGATCCCCTCGTCCCGCAGTTCGG
GCGGCAGATCGACTCCGGCGTCGTCGCGGCGGCCGGCGGCAACCTCGTCGCCCTCTACGCCGGCCCGTACCGCCCCGCCT
CCTCGTCCATGGGGTGCTACCTCGTCTACGACGCCGCCGCCCGATCGAGTTCGCCGCCGCTCTCCACGGTCCCCGGCGTC
CCCTACTCCGACTCCCACTCGAGCCCCGGCCGCGCGACCGTCATCGCGCCAGCCGCCACCGGCGGCGGATTCATGGATGG
CCACAGTGTACTACCACCGTCGACCGCCGAGATCACCATCACCACATGGACACTCGATCTACAGGATGATCATTCGACGT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis