Browse Element(s) Details


OsAffx.30693.1.S1_at

Description tigr:9638.m03276
TID=OsAffx.30693.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3674010/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36720OsAffx.19542.3.S1_x_at10/1110+19326578..19330800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36729OsAffx.3688.1.S1_x_at1/1110+19335623..19339255hypothetical protein
LOC_Os10g36740OsAffx.30693.1.S1_at10/1110+19341853..19343977Cytochrome P450 family protein
LOC_Os10g36750Os.46646.1.S1_x_at11/1110+19346385..19347071hypothetical protein
LOC_Os10g36760Os.8008.1.S1_a_at11/1110+19347504..19352784prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36770OsAffx.20203.1.S1_at7/1110+19353705..19354109hypothetical protein
LOC_Os10g36780Os.46474.2.S1_x_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36780Os.46474.1.S1_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30693.1.S1_at--726--4251Chr10:19342785..19342809 (25 bp)
CCGGACATCCAGACGCGGCTGTGCG
LOC_Os10g36740
OsAffx.30693.1.S1_at--744--7791Chr10:19342892..19342916 (25 bp)
GGTCTCGTCCGTGCAGCGGCACATG
LOC_Os10g36740
OsAffx.30693.1.S1_at--329--9811NONE
TAACGTGATATGGACATCGTCGGAA
NONE
OsAffx.30693.1.S1_at--184--1351Chr10:19343662..19343686 (25 bp)
AGAGTTCTCGCCAGAGAGGTTCATG
LOC_Os10g36740
OsAffx.30693.1.S1_at--30--3551Chr10:19343716..19343740 (25 bp)
CATCGGCAGCAAGCAGGAGGCAACA
LOC_Os10g36740
OsAffx.30693.1.S1_at--811--5011Chr10:19343728..19343752 (25 bp)
GCAGGAGGCAACAACTAAGGTGAAA
LOC_Os10g36740
OsAffx.30693.1.S1_at--525--7751Chr10:19343746..19343770 (25 bp)
GGTGAAAATGATGCCGTTCAGCGCC
LOC_Os10g36740
OsAffx.30693.1.S1_at--978--1891Chr10:19343780..19343804 (25 bp)
ACGTGCCCCGGGATGGGATATGCCA
LOC_Os10g36740
OsAffx.30693.1.S1_at--903--7011Chr10:19343818..19343842 (25 bp)
GTACTTTCTCGCGAATCTGGTCACG
LOC_Os10g36740
OsAffx.30693.1.S1_at--1052--4111Chr10:19343829..19343853 (25 bp)
CGAATCTGGTCACGGCCTTCGAGTG
LOC_Os10g36740
OsAffx.30693.1.S1_at--489--4671Chr10:19343891..19343915 (25 bp)
GCGGACTACGGGTTCATCACCACCA
LOC_Os10g36740
Target Sequence 
CCGGACATCCAGACGCGGCTGTGCGGCGAGGTCGAGGCGGCCGCCGGCGGCGAGCCGTGCGCGTACCTGAGGGCCGTGGT
GATGGAGTGCCTGCGGCGGCATCCTCCGGTCTCGTCCGTGCAGCGGCACATGGTGCGCGACGTGATGCTCGGCGGCGCGC
ACGTCGCGCGGGGTAACGTGATATGGACATCGTCGGAAGAGTTCTCGCCAGAGAGGTTCATGGAGGGCGGGGAAGAAGGG
GTGAGGTTGGCCATCGGCAGCAAGCAGGAGGCAACAACTAAGGTGAAAATGATGCCGTTCAGCGCCGGGCGAAGGACGTG
CCCCGGGATGGGATATGCCATCCTGCACCTGGAGTACTTTCTCGCGAATCTGGTCACGGCCTTCGAGTGGCGCCGAGTCC
CATGGGAGGAGGAGGTGGATCTCACGGCGGACTACGGGTTCATCACCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis