Browse Element(s) Details


OsAffx.20209.1.S1_at

Description gb:NM_197295.1
DB_XREF= gi:37535949
TID=OsAffx.20209.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0005K07.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3663411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36590OsAffx.15595.1.S1_at1/1110+19245240..19248197retrotransposon, putative, centromere-specific
LOC_Os10g36600OsAffx.10957.1.S1_x_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36600OsAffx.10957.1.S1_at1/1110+19250845..19251132hypothetical protein
LOC_Os10g36610NANA10+19253665..19253934hypothetical protein
LOC_Os10g36620Os.46597.2.S1_at7/1110+19264676..19265368expressed protein
LOC_Os10g36634OsAffx.30691.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36634OsAffx.20209.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36650Os.19742.1.S1_at11/1110+19277241..19281153Actin-2, putative, expressed
LOC_Os10g36660OsAffx.20208.1.S1_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36660OsAffx.20208.1.S1_x_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36670OsAffx.18540.1.S1_at11/1110+19285544..19286365expressed protein
LOC_Os10g36670OsAffx.18540.1.S1_x_at11/1110+19285544..19286365expressed protein
LOC_Os10g36680OsAffx.20207.1.S1_at11/1110+19287802..19288929membrane associated salt-inducible protein, putative
LOC_Os10g36690Os.5030.1.S1_at11/1110+19291938..19296510dehydration-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20209.1.S1_at--1023--9911Chr10:19267655..19267679 (25 bp)
TACGGTCGCTGTAGACAAGCCCCAA
LOC_Os10g36634
OsAffx.20209.1.S1_at--285--10691Chr10:19267795..19267819 (25 bp)
TTGCCAGCAGTTGCCGAGTCTGAAA
LOC_Os10g36634
OsAffx.20209.1.S1_at--1143--5051Chr10:19267857..19267881 (25 bp)
GCAGCAGTGAAATCCCATTCCTGAC
LOC_Os10g36634
OsAffx.20209.1.S1_at--666--91Chr10:19267873..19267897 (25 bp)
ATTCCTGACAAATGCCGAAGCTCTC
LOC_Os10g36634
OsAffx.20209.1.S1_at--764--2691Chr10:19267890..19267914 (25 bp)
AAGCTCTCATTGTCTCAGGAATTTA
LOC_Os10g36634
OsAffx.20209.1.S1_at--621--2991Chr10:19268338..19268362 (25 bp)
AATGTTTCGCATTCTCTGCAATGGA
LOC_Os10g36634
OsAffx.20209.1.S1_at--309--8191Chr10:19268380..19268404 (25 bp)
GGAATCATGTCTACTACTTGGCGCG
LOC_Os10g36634
OsAffx.20209.1.S1_at--988--7951Chr10:19268426..19268450 (25 bp)
GGATCACGGATTACAGCATTGGGCA
LOC_Os10g36634
OsAffx.20209.1.S1_at--1020--3391Chr10:19268439..19268463 (25 bp)
CAGCATTGGGCATTTGTGTTCGATT
LOC_Os10g36634
OsAffx.20209.1.S1_at--70--4051Chr10:19268459..19268483 (25 bp)
CGATTTGGGATCAGGTGCGTGCATT
LOC_Os10g36634
OsAffx.20209.1.S1_at--280--7331Chr10:19268477..19268501 (25 bp)
GTGCATTGGAAGTGATCCCTTACCC
LOC_Os10g36634
Target Sequence 
TACGGTCGCTGTAGACAAGCCCCAACCGCGGCGGCGCCGGCGGGACTTGACAGCGGTGGCCGGAGCACGGAGGCCGCTCC
GGCGGCGCCGGCGAAGTGTTGCTGGAGGCGGCATGAGGACGAGGTTGCTGCACTTGCTGCTTGCCAGCAGTTGCCGAGTC
TGAAACTAGCACTAGCAAGATCACAAGAGCTTGAGCCACAAAGCAGCAGTGAAATCCCATTCCTGACAAATGCCGAAGCT
CTCATTGTCTCAGGAATTTATGCAGCCTATGCATTGNNNNGGANNNGGNTTNNTNNTNANGCNNNNCTCTTGGGGCATGG
CGAATGTTTCGCATTCTCTGCAATGGAGTTTCCTACGATCAAGGGGAATCATGTCTACTACTTGGCGCGCCGCGGCAACA
ATGAACATGAGGATCACGGATTACAGCATTGGGCATTTGTGTTCGATTTGGGATCAGGTGCGTGCATTGGAAGTGATCCC
TTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis