Browse Element(s) Details


Os.18773.1.S1_at

Description gb:AK119863.1
DB_XREF= gi:37989486
TID=Os.18773.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-178-H10, full insert sequence.
FL= gb:AK066616.1 gb:AK119863.1 gb:AK119894.1 gb:AK119881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6218010/11lectin protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62110Os.16788.1.S1_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.49772.1.S1_s_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.57290.1.S1_at10/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62120OsAffx.13579.1.S1_at11/113+35137617..35140311DnaJ domain containing protein
LOC_Os03g62130OsAffx.13580.1.S1_at11/113+35141491..35142321DnaJ domain containing protein
LOC_Os03g62140OsAffx.3669.1.S1_at11/113+35144660..35145523DnaJ domain containing protein
LOC_Os03g62150OsAffx.13581.1.S1_at11/113+35146476..35147264DnaJ domain containing protein
LOC_Os03g62160Os.7347.1.S1_at11/113+35147432..35150284expressed protein
LOC_Os03g62160Os.17465.1.S1_x_at1/113+35147432..35150284expressed protein
LOC_Os03g62170Os.24911.1.S1_at10/113+35151821..35157202Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g62180Os.18773.1.S1_at10/113+35158306..35161738lectin protein kinase family protein, putative, expressed
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed
LOC_Os03g62220NANA3+35182499..35182903hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18773.1.S1_at--929--9071Chr03:35158570..35158594 (25 bp)
TGCTTTTCACTGATGGTGAGCAATT
LOC_Os03g62180
Os.18773.1.S1_at--708--6251Chr03:35158559..35158583 (25 bp)
GATGGTGAGCAATTTCGTACTTCTA
LOC_Os03g62180
Os.18773.1.S1_at--696--5951Chr03:35158553..35158577 (25 bp)
GAGCAATTTCGTACTTCTACTTGAG
LOC_Os03g62180
Os.18773.1.S1_at--184--4011Chr03:35158544..35158568 (25 bp)
CGTACTTCTACTTGAGAGGATATCT
LOC_Os03g62180
Os.18773.1.S1_at--264--251Chr03:35158525..35158549 (25 bp)
ATATCTATGTGCCTGATGAGCTGAA
LOC_Os03g62180
Os.18773.1.S1_at--757--4471Chr03:35158515..35158539 (25 bp)
GCCTGATGAGCTGAATTCTGCAATT
LOC_Os03g62180
Os.18773.1.S1_at--508--4751Chr03:35158506..35158530 (25 bp)
GCTGAATTCTGCAATTTGTAAGTAC
LOC_Os03g62180
Os.18773.1.S1_at--810--91Chr03:35158457..35158481 (25 bp)
ATTCGCGTTGTAACTTGTACAAATA
LOC_Os03g62180
Os.18773.1.S1_at--759--5131Chr03:35158342..35158366 (25 bp)
GCAAAGGCAGAGATAAGCAGATCAA
LOC_Os03g62180
Os.18773.1.S1_at--379--331Chr03:35158318..35158342 (25 bp)
ATAAAAATTCAGCTACTTCAGTTTG
LOC_Os03g62180
Os.18773.1.S1_at--163--3731NONE
CTACTTCAGTTTGTTCAGTAGTGAG
NONE
Target Sequence 
TGCTTTTCACTGATGGTGAGCAATTTCGTACTTCTACTTGAGAGGATATCTATGTGCCTGATGAGCTGAATTCTGCAATT
TGTAAGTACAGATTAGATCAAACTCAATGGTATATTCGCGTTGTAACTTGTACAAATAATTCAAATGAGGCGATGCATTN
GATAAATGGAGTGCAAACATAGATGCAANAGCTTGTNTGATTGTAGATTATGGTTTTGGGGAAGCTAAAGCAAAGGCAGA
GATAAGCAGATCAATAAAAATTCAGCTACTTCAGTTTGTTCAGTAGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis