Browse Element(s) Details


Os.6602.1.S1_at

Description gb:AK121130.1
DB_XREF= gi:37990753
TID=Os.6602.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075F04, full insert sequence.
FL= gb:AK121130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6221011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62170Os.24911.1.S1_at10/113+35151821..35157202Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g62180Os.18773.1.S1_at10/113+35158306..35161738lectin protein kinase family protein, putative, expressed
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed
LOC_Os03g62220NANA3+35182499..35182903hypothetical protein
LOC_Os03g62224OsAffx.21120.1.S1_x_at2/113+35187189..35187906hypothetical protein
LOC_Os03g62230OsAffx.3671.1.S1_at11/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62230OsAffx.13726.1.S1_x_at1/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62240Os.20575.1.S1_at11/113+35191810..35194145expressed protein
LOC_Os03g62250Os.17288.1.S1_at11/113+35194672..35197631zinc finger family protein, putative, expressed
LOC_Os03g62260Os.56320.1.S1_at11/113+35198200..35203360Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6602.1.S1_at--435--5291Chr03:35181107..35181131 (25 bp)
GAAGGCGGCGCAGCTAATTACCTCG
LOC_Os03g62210
Os.6602.1.S1_at--110--2032Chr03:35181117..35181141 (25 bp)
CAGCTAATTACCTCGTCTTCGTCGA
LOC_Os03g62210
Os.6602.1.S1_at--717--2011Chr03:35181353..35181377 (25 bp)
ACTACAAGAACGTCGTGAGCGGGTT
LOC_Os03g62210
Os.6602.1.S1_at--922--5131Chr03:35181528..35181552 (25 bp)
GCAACCTCAGGTGAACCGGGTGCTA
LOC_Os03g62210
Os.6602.1.S1_at--426--7711Chr03:35181545..35181569 (25 bp)
GGGTGCTACCGAGCGCGACATTGTC
LOC_Os03g62210
Os.6602.1.S1_at--824--5451Chr03:35181616..35181640 (25 bp)
GAACGATTTCGCTGGGAGATCCGCT
LOC_Os03g62210
Os.6602.1.S1_at--978--10391Chr03:35181679..35181703 (25 bp)
TTTTGCTGCGTGTAGGCGTGTGCTT
LOC_Os03g62210
Os.6602.1.S1_at--1038--10831Chr03:35181711..35181735 (25 bp)
TTGTGTAGCACACTGATTCAGCTTT
LOC_Os03g62210
Os.6602.1.S1_at--733--11Chr03:35181754..35181778 (25 bp)
CTTGTTTAAACTGCCGACGTGTGCT
LOC_Os03g62210
Os.6602.1.S1_at--937--5751Chr03:35181769..35181793 (25 bp)
GACGTGTGCTTATCTCTGTACTATG
LOC_Os03g62210
Os.6602.1.S1_at--87--3891Chr03:35181784..35181808 (25 bp)
CTGTACTATGCAATTCTACGCTGTA
LOC_Os03g62210
Target Sequence 
GAAGGCGGCGCAGCTAATTACCTCGTCTTCGTCGACCCCCCGCCCTCCGGCGTCGTCTGCACCGCCTACCAGCTCTCCAT
CCTCGCCGCCGCGCTCGGCAGCGAGGAGAAGGCGAAGGGGGCAATCATATACAACTACAAGAACGTCGTGAGCGGGTTCT
CGGCGAGGCTCACTCCGTCGGAGCTGGAGGCGGTTAAGAAGCAACCTCAGGTGAACCGGGTGCTACCGAGCGCGACATTG
TCGNTCATGAGCAGCAACTTCGACGGCATCAGCTGATGAGATCAAAACGAACGATTTCGCTGGGAGATCCGCTCGGTGTT
TTTNAATTTTAATTTCTCGTGCTTTNATGTTCTTTTGCTGCGTGTAGGCGTGTGCTTTGGGTGATTGTGTAGCACACTGA
TTCAGCTTTTTTTTCTCCTTAATTAATCTTGTTTAAACTGCCGACGTGTGCTTATCTCTGTACTATGCAATTCTACGCTG
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis