Browse Element(s) Details


OsAffx.3672.1.S1_at

Description tigr:9631.m06150
TID=OsAffx.3672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative MATE efflux membrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6227011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed
LOC_Os03g62220NANA3+35182499..35182903hypothetical protein
LOC_Os03g62224OsAffx.21120.1.S1_x_at2/113+35187189..35187906hypothetical protein
LOC_Os03g62230OsAffx.3671.1.S1_at11/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62230OsAffx.13726.1.S1_x_at1/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62240Os.20575.1.S1_at11/113+35191810..35194145expressed protein
LOC_Os03g62250Os.17288.1.S1_at11/113+35194672..35197631zinc finger family protein, putative, expressed
LOC_Os03g62260Os.56320.1.S1_at11/113+35198200..35203360Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed
LOC_Os03g62280Os.15921.1.S1_at7/113+35224339..35225995expressed protein
LOC_Os03g62290Os.57380.1.S1_at11/113+35227584..35228334expressed protein
LOC_Os03g62300OsAffx.13582.1.S1_at5/113+35230578..35238629hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3672.1.S1_at--86--5791Chr03:35208260..35208284 (25 bp)
GACGACGTCGTTTACGATCGTGCAC
LOC_Os03g62270
OsAffx.3672.1.S1_at--995--6391Chr03:35208275..35208299 (25 bp)
GATCGTGCACGTACGCTTTTGGTTT
LOC_Os03g62270
OsAffx.3672.1.S1_at--885--10531Chr03:35208293..35208317 (25 bp)
TTGGTTTTGGGTACACGGCGACGCA
LOC_Os03g62270
OsAffx.3672.1.S1_at--360--8471Chr03:35208318..35208342 (25 bp)
TGGCGCGGACACATGCATCGATCGA
LOC_Os03g62270
OsAffx.3672.1.S1_at--641--4011Chr03:35208340..35208364 (25 bp)
CGATCGTTGATCGTACGGACCGAAT
LOC_Os03g62270
OsAffx.3672.1.S1_at--801--6991Chr03:35208352..35208376 (25 bp)
GTACGGACCGAATTGGCCTAGCTAT
LOC_Os03g62270
OsAffx.3672.1.S1_at--796--10871Chr03:35208364..35208388 (25 bp)
TTGGCCTAGCTATATGCTGCTGATC
LOC_Os03g62270
OsAffx.3672.1.S1_at--240--8851Chr03:35208384..35208408 (25 bp)
TGATCATACGCTACGCGCTGCAAGT
LOC_Os03g62270
OsAffx.3672.1.S1_at--678--6391Chr03:35208585..35208609 (25 bp)
GATCGATGGCGATGGAACATGCAAC
LOC_Os03g62270
OsAffx.3672.1.S1_at--166--5491Chr03:35208599..35208623 (25 bp)
GAACATGCAACGTGTACTGCTAGAT
LOC_Os03g62270
OsAffx.3672.1.S1_at--746--971Chr03:35208628..35208652 (25 bp)
AGGAGCTAGCTAGGCCTGCCTGAAT
LOC_Os03g62270
Target Sequence 
GACGACGTCGTTTACGATCGTGCACGTACGCTTTTGGTTTTGGGTACACGGCGACGCATGGCGCGGACACATGCATCGAT
CGATCGTTGATCGTACGGACCGAATTGGCCTAGCTATATGCTGCTGATCATACGCTACGCGCTGCAAGTTGGGGCGTCAG
TGGCTGAAGCTGCGTGCGTGCGTGGTTGGAAAATGACAGGGGCTGAATTAGATTAAGTGGGCTAGCAATATCAGGATCAA
CAAGCTATATATAGCTACAAGCACTGGTGAGGTGGGTTTGTTTTGTGTGTACATGTGCGTGTTTGTGTGAGTGTTGACAA
GTTGAGATCGATGGCGATGGAACATGCAACGTGTACTGCTAGATGATCAGGAGCTAGCTAGGCCTGCCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis