Browse Element(s) Details


OsAffx.13582.1.S1_at

Description tigr:9631.m06153
TID=OsAffx.13582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g623005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed
LOC_Os03g62280Os.15921.1.S1_at7/113+35224339..35225995expressed protein
LOC_Os03g62290Os.57380.1.S1_at11/113+35227584..35228334expressed protein
LOC_Os03g62300OsAffx.13582.1.S1_at5/113+35230578..35238629hypothetical protein
LOC_Os03g62314OsAffx.8801.1.S1_at2/113+35243125..35248319retrotransposon protein, putative, LINE subclass
LOC_Os03g62330Os.56918.1.S1_at11/113+35248789..35249685expressed protein
LOC_Os03g62340Os.9205.1.S1_x_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340Os.9205.1.S1_s_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340OsAffx.25794.1.S1_at1/113+35251687..35256292Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13582.1.S1_at--510--3491Chr03:35230355..35230379 (25 bp)
CAGGCTCGCGAGTACAACATCATAA
NONE
OsAffx.13582.1.S1_at--662--7031Chr03:35230366..35230390 (25 bp)
GTACAACATCATAAATCCACTGGAG
NONE
OsAffx.13582.1.S1_at--755--3031Chr03:35230379..35230403 (25 bp)
AATCCACTGGAGGTCTTGATGCTAG
NONE
OsAffx.13582.1.S1_at--1070--3611Chr03:35230393..35230417 (25 bp)
CTTGATGCTAGAGTCCATCGCCCAT
NONE
OsAffx.13582.1.S1_at--684--851Chr03:35230535..35230557 (23 bp)
ATGGCGGTCACCTGTCACCCGGGTG
NONE
OsAffx.13582.1.S1_at--636--8731Chr03:35230547..35230917 (25 bp)
TGTCACCCGGGTGAACAGACTTTCT
NONE
OsAffx.13582.1.S1_at--910--3671Chr03:35230912..35230936 (25 bp)
CTTTCTTCATGATGTGGACTGAGAA
LOC_Os03g62300
OsAffx.13582.1.S1_at--285--8671Chr03:35230924..35230948 (25 bp)
TGTGGACTGAGAATCCCAGAAACGC
LOC_Os03g62300
OsAffx.13582.1.S1_at--513--1471Chr03:35230933..35230957 (25 bp)
AGAATCCCAGAAACGCGGAGGCGGC
LOC_Os03g62300
OsAffx.13582.1.S1_at--847--8591Chr03:35231015..35231039 (25 bp)
TGGTCAAGACGGAGTCCTCGAGCGC
LOC_Os03g62300
OsAffx.13582.1.S1_at--128--2771Chr03:35231020..35231044 (25 bp)
AAGACGGAGTCCTCGAGCGCACGCG
LOC_Os03g62300
Target Sequence 
CAGGCTCGCGAGTACAACATCATAAATCCACTGGAGGTCTTGATGCTAGAGTCCATCGCCCATGGCGTGCTGGTCGTGGC
GTGGCCGCACTTCTCCGACCAGTTCCTGAACGAGCGGCTCGTCGTCGACGTGCTCGGCGTCGGCGTGACGACGCCCGTGC
TGCTGCTCGGCGACGAGGCCATGGCGGTCACCTGTCACCCGGGTGAACAGACTTTCTTCATGATGTGGACTGAGAATCCC
AGAAACGCGGAGGCGGCTGCGGCGGCGGCGGGCGCGGCTGGGCGACGTGGCGGAGCTGGAGAGCGTGCTGGAGGTGGTCA
AGACGGAGTCCTCGAGCGCACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis