Browse Element(s) Details


Os.56918.1.S1_at

Description gb:AK110581.1
DB_XREF= gi:32995790
TID=Os.56918.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E09, full insert sequence.
FL= gb:AK110581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6233011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62280Os.15921.1.S1_at7/113+35224339..35225995expressed protein
LOC_Os03g62290Os.57380.1.S1_at11/113+35227584..35228334expressed protein
LOC_Os03g62300OsAffx.13582.1.S1_at5/113+35230578..35238629hypothetical protein
LOC_Os03g62314OsAffx.8801.1.S1_at2/113+35243125..35248319retrotransposon protein, putative, LINE subclass
LOC_Os03g62330Os.56918.1.S1_at11/113+35248789..35249685expressed protein
LOC_Os03g62340Os.9205.1.S1_x_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340Os.9205.1.S1_s_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340OsAffx.25794.1.S1_at1/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62350Os.35344.18.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350Os.35344.3.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350OsAffx.22940.5.S1_x_at3/113+35265693..35267285hypothetical protein
LOC_Os03g62360NANA3+35268944..35269576hypothetical protein
LOC_Os03g62370Os.49694.1.S1_at11/113+35271028..35273340WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g62379OsAffx.25795.1.S1_at10/113+35274340..35276037Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56918.1.S1_at--814--7611Chr03:35249290..35249314 (25 bp)
GGGACGGTCAGCCAATTCAAAGGAC
LOC_Os03g62330
Os.56918.1.S1_at--259--1651Chr03:35249281..35249305 (25 bp)
AGCCAATTCAAAGGACGAGGACGAC
LOC_Os03g62330
Os.56918.1.S1_at--1037--6171Chr03:35249265..35249289 (25 bp)
GAGGACGACATAGCCTTCACGGTGC
LOC_Os03g62330
Os.56918.1.S1_at--109--10531Chr03:35249250..35249274 (25 bp)
TTCACGGTGCTCTATGGCGACAAGA
LOC_Os03g62330
Os.56918.1.S1_at--99--7431Chr03:35249223..35249247 (25 bp)
GTGTAAATATTCATACTCCCTTTAT
LOC_Os03g62330
Os.56918.1.S1_at--166--7211Chr03:35248935..35248959 (25 bp)
GTCGATTTGTCAGAATTTCGGCTGT
LOC_Os03g62330
Os.56918.1.S1_at--174--8771Chr03:35248905..35248929 (25 bp)
TGTATATATGTGCTTTACGTGTCTA
LOC_Os03g62330
Os.56918.1.S1_at--1110--7051Chr03:35248855..35248879 (25 bp)
GTAAGCACTGAGCACTGAGGCATCA
LOC_Os03g62330
Os.56918.1.S1_at--89--8891Chr03:35248840..35248864 (25 bp)
TGAGGCATCATTTCCTTCATTTCGG
LOC_Os03g62330
Os.56918.1.S1_at--1096--9591Chr03:35248833..35248857 (25 bp)
TCATTTCCTTCATTTCGGTTTCGAA
LOC_Os03g62330
Os.56918.1.S1_at--931--1351Chr03:35248796..35248820 (25 bp)
AGAGACAATTGGAGCATTATGCATT
LOC_Os03g62330
Target Sequence 
GGGACGGTCAGCCAATTCAAAGGACGAGGACGACATAGCCTTCACGGTGCTCTATGGCGACAAGATTGTGTAAATATTCA
TACTCCCTTTATCCCAAAATGTTTGACGCCGTTGACTTTTTTAAAAATATTTGACTGTTCGTCTTATTTAAAAAAATTTA
AATAATAATTAATTCTTTTCCTATCATTTGNATTTATTGTTAAATATACTTTTATATATNCNTATAGNTTTACATATTTC
NACAAANNTTTTTGAATAAGACAAATGGNTNAACATACTTTAAAAAGTCAACAGCGTCAAACATTTAGGGAAGTAAGGAA
TATTTTGGGTCTATTTTCAAAATAAATTTTATTAAAGGTCGATTTGTCAGAATTTCGGCTGTTTTGATGTATATATGTGC
TTTACGTGTCTAAATTCATAGAATAGAGAGTACTAAAGTAAGCACTGAGCACTGAGGCATCATTTCCTTCATTTCGGTTT
CGAAAGGAGGTTGGAAAGAGACAATTGGAGCATTATGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis