Browse Element(s) Details


Os.9205.1.S1_s_at

Description gb:AK067347.1
DB_XREF= gi:32977365
TID=Os.9205.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106E16, full insert sequence.
FL= gb:AK067347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6234011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62290Os.57380.1.S1_at11/113+35227584..35228334expressed protein
LOC_Os03g62300OsAffx.13582.1.S1_at5/113+35230578..35238629hypothetical protein
LOC_Os03g62314OsAffx.8801.1.S1_at2/113+35243125..35248319retrotransposon protein, putative, LINE subclass
LOC_Os03g62330Os.56918.1.S1_at11/113+35248789..35249685expressed protein
LOC_Os03g62340Os.9205.1.S1_x_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340Os.9205.1.S1_s_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340OsAffx.25794.1.S1_at1/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62350Os.35344.18.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350Os.35344.3.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350OsAffx.22940.5.S1_x_at3/113+35265693..35267285hypothetical protein
LOC_Os03g62360NANA3+35268944..35269576hypothetical protein
LOC_Os03g62370Os.49694.1.S1_at11/113+35271028..35273340WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g62379OsAffx.25795.1.S1_at10/113+35274340..35276037Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g62388OsAffx.3674.1.S1_at11/113+35276862..35279517hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9205.1.S1_s_at--1144--1152Chr03:35252070..35252094 (25 bp)
AGTCACACCTGAACCTCGCGTTGCT
LOC_Os03g62340
Os.9205.1.S1_s_at--928--9692Chr03:35252068..35252092 (25 bp)
TCACACCTGAACCTCGCGTTGCTGG
LOC_Os03g62340
Os.9205.1.S1_s_at--687--2152Chr03:35252066..35252090 (25 bp)
ACACCTGAACCTCGCGTTGCTGGGC
LOC_Os03g62340
Os.9205.1.S1_s_at--601--3312Chr03:35252020..35252044 (25 bp)
CACTGCAGCACTGAACAGACCATGG
LOC_Os03g62340
Os.9205.1.S1_s_at--461--1972Chr03:35252019..35252043 (25 bp)
ACTGCAGCACTGAACAGACCATGGA
LOC_Os03g62340
Os.9205.1.S1_s_at--527--2492Chr03:35252007..35252031 (25 bp)
AACAGACCATGGACACTTCAGCTGA
LOC_Os03g62340
Os.9205.1.S1_s_at--1049--1372Chr03:35252004..35252028 (25 bp)
AGACCATGGACACTTCAGCTGACGG
LOC_Os03g62340
Os.9205.1.S1_s_at--216--5852Chr03:35252003..35252027 (25 bp)
GACCATGGACACTTCAGCTGACGGG
LOC_Os03g62340
Os.9205.1.S1_s_at--619--1732Chr03:35252002..35252026 (25 bp)
ACCATGGACACTTCAGCTGACGGGT
LOC_Os03g62340
Os.9205.1.S1_s_at--624--7432Chr03:35251886..35251910 (25 bp)
GTGTATAGAGTCTCTCAATTCTCAT
LOC_Os03g62340
Os.9205.1.S1_s_at--599--8772Chr03:35251885..35251909 (25 bp)
TGTATAGAGTCTCTCAATTCTCATA
LOC_Os03g62340
Target Sequence 
AGTCACACCTGAACCTCGCGTTGCTGGGCGTGGAGGATGACACCCTCTCNCACTGCAGCACTGAACAGACCATGGACACT
TCAGCTGACGGGTACTGGAGCCGGTCATCGAGCTTCGACTAACCTCCTGCTTTTTTCTTAACCNCCATTTGTTCTGATTT
TGAGCCATGTGAATGGGGAGCTNTGTGTATAGAGTCTCTCAATTCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9205.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis