Browse Element(s) Details


Os.56320.1.S1_at

Description gb:AK109847.1
DB_XREF= gi:32995056
TID=Os.56320.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F03, full insert sequence.
FL= gb:AK109847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6226011/11Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed
LOC_Os03g62220NANA3+35182499..35182903hypothetical protein
LOC_Os03g62224OsAffx.21120.1.S1_x_at2/113+35187189..35187906hypothetical protein
LOC_Os03g62230OsAffx.3671.1.S1_at11/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62230OsAffx.13726.1.S1_x_at1/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62240Os.20575.1.S1_at11/113+35191810..35194145expressed protein
LOC_Os03g62250Os.17288.1.S1_at11/113+35194672..35197631zinc finger family protein, putative, expressed
LOC_Os03g62260Os.56320.1.S1_at11/113+35198200..35203360Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed
LOC_Os03g62280Os.15921.1.S1_at7/113+35224339..35225995expressed protein
LOC_Os03g62290Os.57380.1.S1_at11/113+35227584..35228334expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56320.1.S1_at--738--8751Chr03:35198764..35198788 (25 bp)
TGTACTCTGTTGATTTTGGACCCCT
LOC_Os03g62260
Os.56320.1.S1_at--938--151Chr03:35198752..35198776 (25 bp)
ATTTTGGACCCCTCAATGTGCTTAG
LOC_Os03g62260
Os.56320.1.S1_at--467--8691Chr03:35198736..35198760 (25 bp)
TGTGCTTAGGGCTGCAGCGTTTCAC
LOC_Os03g62260
Os.56320.1.S1_at--648--1631Chr03:35198721..35198745 (25 bp)
AGCGTTTCACGGTGCCCAGTACATA
LOC_Os03g62260
Os.56320.1.S1_at--64--9771Chr03:35198677..35198701 (25 bp)
TAATCTCGTATGCAATGGGCGACGC
LOC_Os03g62260
Os.56320.1.S1_at--175--4971Chr03:35198520..35198544 (25 bp)
GCATCACAGGCACACGTTGCAGAGA
LOC_Os03g62260
Os.56320.1.S1_at--24--7971Chr03:35198468..35198492 (25 bp)
GGATCTCCTGGTGATCTAGGATTAC
LOC_Os03g62260
Os.56320.1.S1_at--81--8691Chr03:35198326..35198350 (25 bp)
TGTGCAGGTTGCAGTCTAGCACCTC
LOC_Os03g62260
Os.56320.1.S1_at--312--3711Chr03:35198311..35198335 (25 bp)
CTAGCACCTCCTTTGCACGTAGATA
LOC_Os03g62260
Os.56320.1.S1_at--1113--10331Chr03:35198282..35198306 (25 bp)
TTTTCTCGATTTCTACGGGTACTAT
LOC_Os03g62260
Os.56320.1.S1_at--663--7691Chr03:35198266..35198290 (25 bp)
GGGTACTATATCAATCAACTCGTGT
LOC_Os03g62260
Target Sequence 
TGTACTCTGTTGATTTTGGACCCCTCAATGTGCTTAGGGCTGCAGCGTTTCACGGTGCCCAGTACATATCACCACTGAAG
AAGAACATAATCTCGTATGCAATGGGCGACGCGAAATGGCCNGCTGTTTTCATAGACAGTAGATCCGGAAACTTTAAATT
TGTTAGTTGTTACTGCAGTGNTCGATGTGTTATTCTAAATTAGTATAGTGTACTTTGTCTCNAGTGTTCTCATCCAGAGT
AGTAATGCATCACAGGCACACGTTGCAGAGAAGAAATGTAGCTAGAAAGAAATAAATTGGATCTCCTGGTGATCTAGGAT
TACCNTNNNNNTGTACNTCCTCTTGCACTNCAGTAACTCGCTTNNTGNTTTGACCCACAAAGTTCAGATCTGTGCAAGGC
AAGATGATATTGAAGTGTTGACTGTTGACGAAGATCAGTCAATCTGTGCAGGTTGCAGTCTAGCACCTCCTTTGCACGTA
GATATTCTTTTTCTCGATTTCTACGGGTACTATATCAATCAACTCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis