Browse Element(s) Details


Os.52796.2.S1_x_at

Description gb:AK069311.1
DB_XREF= gi:32979335
TID=Os.52796.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012N17, full insert sequence.
FL= gb:AK069311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6220011/11Ammonium transporter 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62170Os.24911.1.S1_at10/113+35151821..35157202Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g62180Os.18773.1.S1_at10/113+35158306..35161738lectin protein kinase family protein, putative, expressed
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed
LOC_Os03g62220NANA3+35182499..35182903hypothetical protein
LOC_Os03g62224OsAffx.21120.1.S1_x_at2/113+35187189..35187906hypothetical protein
LOC_Os03g62230OsAffx.3671.1.S1_at11/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62230OsAffx.13726.1.S1_x_at1/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62240Os.20575.1.S1_at11/113+35191810..35194145expressed protein
LOC_Os03g62250Os.17288.1.S1_at11/113+35194672..35197631zinc finger family protein, putative, expressed
LOC_Os03g62260Os.56320.1.S1_at11/113+35198200..35203360Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015696biological_processammonium transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
GO:0015398molecular_functionhigh affinity ammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52796.2.S1_x_at--1158--4691Chr03:35180345..35180369 (25 bp)
GCGGCGCCCAGTTCGGCAAGCAGAT
LOC_Os03g62200
Os.52796.2.S1_x_at--434--4991Chr03:35180453..35180477 (25 bp)
GCATGCCCGACGACAAGCTCGAGGT
LOC_Os03g62200
Os.52796.2.S1_x_at--280--1311Chr03:35180531..35180555 (25 bp)
AGATGTACGACGTCACCAAGCACGG
LOC_Os03g62200
Os.52796.2.S1_x_at--994--4531Chr03:35180574..35180598 (25 bp)
GCCCGTCGTCGTATGATCGATGACA
LOC_Os03g62200
Os.52796.2.S1_x_at--126--5691Chr03:35180595..35180619 (25 bp)
GACATTGCATGTGCTGTCACCTGAT
LOC_Os03g62200
Os.52796.2.S1_x_at--273--7311Chr03:35180605..35180629 (25 bp)
GTGCTGTCACCTGATGAAAACCTCA
LOC_Os03g62200
Os.52796.2.S1_x_at--797--3091Chr03:35180653..35180677 (25 bp)
AATACTACGTGTTTGCTTCTACTCG
LOC_Os03g62200
Os.52796.2.S1_x_at--647--9931Chr03:35180706..35180730 (25 bp)
TACGTGTATTTAACAGCGCGCGTGT
LOC_Os03g62200
Os.52796.2.S1_x_at--706--4151Chr03:35180722..35180746 (25 bp)
CGCGCGTGTGGAGTTTTTAGGTATT
LOC_Os03g62200
Os.52796.2.S1_x_at--621--6091Chr03:35180766..35180790 (25 bp)
GAGTCCGGTTCTGTATTTTTGTTAG
LOC_Os03g62200
Os.52796.2.S1_x_at--471--1211Chr03:35180810..35180834 (25 bp)
AGTTTTGTATCCTTACTTGATCTGA
LOC_Os03g62200
Target Sequence 
GCGGCGCCCAGTTCGGCAAGCAGATCGCCGGTGGCCTCTTCGTCGTCGCCTGGAACGTCGCCGTCACCTCCCTCATCTGC
CTCGCCATCAACCTCCTCGTCCCGCTCCGCATGCCCGACGACAAGCTCGAGGTCGGCGACGACGCCGTCCACGGCGAGGA
GGCCTACGCGCTCTGGGGCGACGGCGAGATGTACGACGTCACCAAGCACGGCTCCGACGCCGCCGTTGCGCCCGTCGTCG
TATGATCGATGACATTGCATGTGCTGTCACCTGATGAAAACCTCAAGAAATTCATACACACAGAAATTAATACTACGTGT
TTGCTTCTACTCGTTAATTATGAAAATCTATGTTCAAGTTTTACGTGTATTTAACAGCGCGCGTGTGGAGTTTTTAGGTA
TTGCACTTTGCAGATTCAGGGGAGTCCGGTTCTGTATTTTTGTTAGTTTGTAAAAATACATACGTAGTTTTGTATCCTTA
CTTGATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52796.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis