Browse Element(s) Details


OsAffx.21120.1.S1_x_at

Description gb:NM_193918.1
DB_XREF= gi:34914919
GEN=B1096D03.26
TID=OsAffx.21120.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1096D03.26 (B1096D03.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g622242/11hypothetical protein
LOC_Os11g294101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed
LOC_Os03g62220NANA3+35182499..35182903hypothetical protein
LOC_Os03g62224OsAffx.21120.1.S1_x_at2/113+35187189..35187906hypothetical protein
LOC_Os03g62230OsAffx.3671.1.S1_at11/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62230OsAffx.13726.1.S1_x_at1/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62240Os.20575.1.S1_at11/113+35191810..35194145expressed protein
LOC_Os03g62250Os.17288.1.S1_at11/113+35194672..35197631zinc finger family protein, putative, expressed
LOC_Os03g62260Os.56320.1.S1_at11/113+35198200..35203360Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21120.1.S1_x_at--103--7352Chr01:16242912..16242936 (25 bp)
GTGCACTCTGGCACGGCGGCATTCG
NONE
OsAffx.21120.1.S1_x_at--122--3951Chr01:16242928..16242952 (25 bp)
CGGCATTCGGTGGAGACAACGCTTT
NONE
OsAffx.21120.1.S1_x_at--1135--2591Chr01:16242945..16242969 (25 bp)
AACGCTTTGGCAGCATTCGTGAGTG
NONE
OsAffx.21120.1.S1_x_at--455--4131Chr01:16242947..16242971 (25 bp)
CGCTTTGGCAGCATTCGTGAGTGGC
NONE
OsAffx.21120.1.S1_x_at--963--1531Chr01:16242956..16242980 (25 bp)
AGCATTCGTGAGTGGCGGCGCCGGC
NONE
OsAffx.21120.1.S1_x_at--749--1331Chr01:16242991..16243015 (25 bp)
AGAGGTGGACTCGTGGCGCGGCATC
NONE
OsAffx.21120.1.S1_x_at--501--4971Chr01:16243011..16243035 (25 bp)
GCATCGAGCTCCGAAATGGTGGGAA
NONE
OsAffx.21120.1.S1_x_at--38--4711Chr01:16243037..16243061 (25 bp)
GCGGCGCTTGACGACGGGCGGCATC
NONE
OsAffx.21120.1.S1_x_at--206--3952Chr01:16243055..16243079 (25 bp)
CGGCATCTGCCGGAGTTGAGGAAGA
NONE
OsAffx.21120.1.S1_x_at--1011--2333Chr01:16243101..16243125 (25 bp)
AAAGAGAAGGCTTCGGCCTCGGAGC
NONE
OsAffx.21120.1.S1_x_at--597--4691Chr01:16243138..16243162 (25 bp)
GCGGCAGCACGGGAATGATGTGGCA
NONE
Target Sequence 
GTGCACTCTGGCACGGCGGCATTCGGTGGAGACAACGCTTTGGCAGCATTCGTGAGTGGCGGCGCCGGCATGAGGAGATA
GAGGTGGACTCGTGGCGCGGCATCGAGCTCCGAAATGGTGGGAAGGCGGCGCTTGACGACGGGCGGCATCTGCCGGAGTT
GAGGAAGAGAGAGGGAAGTGGCAGCGCGAAAAGAGAAGGCTTCGGCCTCGGAGCTCGGCAGCGGCGGCGGCAGCACGGGA
ATGATGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21120.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis