Browse Element(s) Details


Os.12192.1.S1_a_at

Description gb:AK058443.1
DB_XREF= gi:32968461
TID=Os.12192.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-G03, full insert sequence.
FL= gb:AK058443.1 gb:AK101225.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6199011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62050OsAffx.13577.1.S1_at11/113+35095123..35096236hypothetical protein
LOC_Os03g62060Os.10435.1.S1_at10/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62060Os.54455.1.S1_at1/113+35099322..35102118amidohydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009409biological_processresponse to cold
GO:0005634cellular_componentnucleus
GO:0000166molecular_functionnucleotide binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12192.1.S1_a_at--1035--791Chr03:35074656..35074680 (25 bp)
ATGGGCGGGCGATCACTGTCGATAA
LOC_Os03g61990
Os.12192.1.S1_a_at--832--2351Chr03:35074633..35074657 (25 bp)
AAAGCTCAGCCACAAGGACCTGGTA
LOC_Os03g61990
Os.12192.1.S1_a_at--957--1351Chr03:35074609..35074633 (25 bp)
AGAGACCGTAATGGAGACCGTGATT
LOC_Os03g61990
Os.12192.1.S1_a_at--182--1791Chr03:35074593..35074617 (25 bp)
ACCGTGATTATGATCGTGACCGTGG
LOC_Os03g61990
Os.12192.1.S1_a_at--155--7371Chr03:35074578..35074602 (25 bp)
GTGACCGTGGATCTCGTTATGACCG
LOC_Os03g61990
Os.12192.1.S1_a_at--801--9391Chr03:35074565..35074589 (25 bp)
TCGTTATGACCGTGGCCGTGACTTT
LOC_Os03g61990
Os.12192.1.S1_a_at--510--2431Chr03:35074481..35074505 (25 bp)
AAAACCTGGCCACTTTGCTAGAGAG
LOC_Os03g61990
Os.12192.1.S1_a_at--422--1791Chr03:35074347..35074371 (25 bp)
ACCGTTATTCTGGTCGTAGTCGAGA
LOC_Os03g61990
Os.12192.1.S1_a_at--656--1871Chr03:35074291..35074315 (25 bp)
CGTTACAGTCGTGACCGGTCTGGTC
LOC_Os03g61990
Os.12192.1.S1_a_at--789--7791Chr03:35074275..35074299 (25 bp)
GGTCTGGTCCCTATTGATGGCCTAT
LOC_Os03g61990
Os.12192.1.S1_a_at--383--6231Chr03:35074260..35074284 (25 bp)
GATGGCCTATCAAATCTCTAAGAAG
LOC_Os03g61990
Target Sequence 
ATGGGCGGGCGATCACTGTCGATAAAGCTCAGCCACAAGGACCTGGTAGAGACCGTAATGGAGACCGTGATTATGATCGT
GACCGTGGATCTCGTTATGACCGTGGCCGTGACTTTGGTGGTGGTGGGCGTGCACCACGTGGCTCAGGTGGTGGTGGGGA
TTGCTACAAGTGTGGAAAACCTGGCCACTTTGCTAGAGAGTGCCCATCTGGAGATGGTGGTGGTAGAGGTGATAGATATG
GTGGCCGAGATGATAGGTACGGTGGTGGTGGTGGCGGTGGCGNGCCNTTNATGGATCTGACCGTGGTGGTGACCGTTATT
CTGGTCGTAGTCGAGATGGTGGTGGCTACGGTGGAGGTGGGGGTGACCGTTACAGTCGTGACCGGTCTGGTCCCTATTGA
TGGCCTATCAAATCTCTAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12192.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis