Browse Element(s) Details


OsAffx.28970.2.S1_at

Description tigr:9631.m01821
TID=OsAffx.28970.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=typical P-type R2R3 Myb protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1848011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein
LOC_Os03g18454Os.22638.1.S1_x_at11/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18454Os.12546.1.S1_at9/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18470OsAffx.12919.1.S1_at11/113+10338878..10340482expressed protein
LOC_Os03g18480OsAffx.28970.2.S1_at11/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.4.S1_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.3.S1_x_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18490OsAffx.12920.1.S1_at11/113+10346030..10347121expressed protein
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein
LOC_Os03g18550Os.15618.1.S1_a_at11/113+10367022..10369954Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28970.2.S1_at--1158--3531Chr03:10342541..10342565 (25 bp)
CATCGCCGACCTCATGCAGAGCATC
LOC_Os03g18480
OsAffx.28970.2.S1_at--180--7731Chr03:10342457..10342481 (25 bp)
GGTGTTCCACGACGCGCCGTACTTC
LOC_Os03g18480
OsAffx.28970.2.S1_at--870--471Chr03:10342350..10342374 (25 bp)
ATCTGCAGCTCAACTGGAGCGACTT
LOC_Os03g18480
OsAffx.28970.2.S1_at--796--3371Chr03:10342345..10342369 (25 bp)
CAGCTCAACTGGAGCGACTTCCTCG
LOC_Os03g18480
OsAffx.28970.2.S1_at--530--3831Chr03:10342275..10342299 (25 bp)
CTGCTCTCGGCCAGTATCAGGAGGG
LOC_Os03g18480
OsAffx.28970.2.S1_at--160--4611Chr03:10342237..10342261 (25 bp)
GCGACTGCCGTCGTGGGCGGAGGCC
LOC_Os03g18480
OsAffx.28970.2.S1_at--478--6211Chr03:10342218..10342242 (25 bp)
GAGGCCGCGCGTTCGGTGACGTCGA
LOC_Os03g18480
OsAffx.28970.2.S1_at--753--4011Chr03:10342199..10342223 (25 bp)
CGTCGACGGTGCATCAGCTGGCGTC
LOC_Os03g18480
OsAffx.28970.2.S1_at--1060--4771Chr03:10342147..10342171 (25 bp)
GCTGCGTCGGCGTTCATTGACGCGA
LOC_Os03g18480
OsAffx.28970.2.S1_at--823--9591Chr03:10342134..10342158 (25 bp)
TCATTGACGCGATCCTCGACTGCGA
LOC_Os03g18480
OsAffx.28970.2.S1_at--88--571Chr03:10342123..10342147 (25 bp)
ATCCTCGACTGCGACAAGGAGATGG
LOC_Os03g18480
Target Sequence 
CATCGCCGACCTCATGCAGAGCATCGGCACGCTCGCCATCCGCCCCCCTCCCGCCGCCGGCGCCGCGCCGCCGCCCTGCC
TCCCGGTGTTCCACGACGCGCCGTACTTCGCCGCCCTGCAGCATCAGCATCAGCAGCAGCAGGTCGTCACGCACGTCGAC
GCCGACGCGCCCGCGTCGCCCGACTCGCAGCATCTGCAGCTCAACTGGAGCGACTTCCTCGCCGACGACGCCGCGGGGCA
CGGCGCCGACGCGCCGGCGCCGCAGGCTGCTCTCGGCCAGTATCAGGAGGGGTCAGCACCGGCGGCGACTGCCGTCGTGG
GCGGAGGCCGCGCGTTCGGTGACGTCGACGGTGCATCAGCTGGCGTCGGCGCCGGCACGGACGACGGCGCCGGGGCTGCG
TCGGCGTTCATTGACGCGATCCTCGACTGCGACAAGGAGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28970.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis