Browse Element(s) Details


Os.11646.1.S1_at

Description gb:AK105818.1
DB_XREF= gi:32991027
TID=Os.11646.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-D03, full insert sequence.
FL= gb:AK073460.1 gb:AK104149.1 gb:AK105818.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1851010/11Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein
LOC_Os03g18454Os.22638.1.S1_x_at11/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18454Os.12546.1.S1_at9/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18470OsAffx.12919.1.S1_at11/113+10338878..10340482expressed protein
LOC_Os03g18480OsAffx.28970.2.S1_at11/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.4.S1_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.3.S1_x_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18490OsAffx.12920.1.S1_at11/113+10346030..10347121expressed protein
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein
LOC_Os03g18550Os.15618.1.S1_a_at11/113+10367022..10369954Mitochondrial carrier protein, expressed
LOC_Os03g18560Os.11237.1.S1_at10/113+10370703..10371797expressed protein
LOC_Os03g18570Os.12358.1.S1_at11/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18570Os.37025.1.S1_at1/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.37025.1.S1_at11/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.12358.1.S1_at2/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18590Os.7592.1.S1_at11/113+10379825..10383326malonyl CoA-acyl carrier protein transacylase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11646.1.S1_at--425--8671Chr03:10353561..10353585 (25 bp)
TGTGCTGACCACACAAACTCTTGAC
LOC_Os03g18510
Os.11646.1.S1_at--155--10491NONE
TTGACAAGGACCAAGGCATTTCAGT
NONE
Os.11646.1.S1_at--224--5951Chr03:10354637..10354661 (25 bp)
GAGCACATAGAAACCCTTAACGAGC
LOC_Os03g18510
Os.11646.1.S1_at--466--7351Chr03:10354719..10354743 (25 bp)
GTGACATCGACCTTACAAATTCCGG
LOC_Os03g18510
Os.11646.1.S1_at--535--6071Chr03:10354782..10354806 (25 bp)
GAGTTTTGTTGTATAGCACCAGCCA
LOC_Os03g18510
Os.11646.1.S1_at--1118--1711Chr03:10354799..10354823 (25 bp)
ACCAGCCAATCTTAAGTCGTCCTAT
LOC_Os03g18510
Os.11646.1.S1_at--664--2771Chr03:10354829..10354853 (25 bp)
AAGAGTTCGTTAGGTTCTGGTGGCT
LOC_Os03g18510
Os.11646.1.S1_at--26--9111Chr03:10354844..10354868 (25 bp)
TCTGGTGGCTGTGACCCCTTTGAAT
LOC_Os03g18510
Os.11646.1.S1_at--599--111Chr03:10354969..10354993 (25 bp)
ATTCTGTTGCTATACATCGTCTTTG
LOC_Os03g18510
Os.11646.1.S1_at--443--511Chr03:10354984..10355008 (25 bp)
ATCGTCTTTGATTGGCCACTTCTAT
LOC_Os03g18510
Os.11646.1.S1_at--658--4391Chr03:10354998..10355022 (25 bp)
GCCACTTCTATTGCCCGTTGTTTTT
LOC_Os03g18510
Target Sequence 
TGTGCTGACCACACAAACTCTTGACAAGGACCAAGGCATTTCAGTTCTCACTGATGCAATTAAAGCTTGCACAGCTGAGA
TCGAGAANCACAAGGGAAAGTTGATAGTTAAGGAAGCACCGAGAGCTGTGAGTGAGAGAGAAGATAAACTGTTCAATGAG
CACATAGAAACCCTTAACGAGCAAAATGCNGAGGTTGATGGTGATGCTGACAGTGAAGAGGAGGAAGATACAGGAATGGG
TGACATCGACCTTACAAATTCCGGNGTCAACGCGGATTAAAGTTCNGCTNTTTGATTTGGATGAGTTTTGTTGTATAGCA
CCAGCCAATCTTAAGTCGTCCTATTTGAAAAGAGTTCGTTAGGTTCTGGTGGCTGTGACCCCTTTGAATTCACTGATGCG
CGTTGTCTGGGGTGTTTGCGTTTTGGGGTTGAGGTCGTGTTGGAGAATTGCTCGAGTAGCATCTAATTTTTTNTTGGGAT
CGAAACATAATTCTGTTGCTATACATCGTCTTTGATTGGCCACTTCTATTGCCCGTTGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis