Browse Element(s) Details


Os.11237.1.S1_at

Description gb:AK101359.1
DB_XREF= gi:32986568
TID=Os.11237.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035E16, full insert sequence.
FL= gb:AK064307.1 gb:AK101359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1856010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18490OsAffx.12920.1.S1_at11/113+10346030..10347121expressed protein
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein
LOC_Os03g18550Os.15618.1.S1_a_at11/113+10367022..10369954Mitochondrial carrier protein, expressed
LOC_Os03g18560Os.11237.1.S1_at10/113+10370703..10371797expressed protein
LOC_Os03g18570Os.12358.1.S1_at11/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18570Os.37025.1.S1_at1/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.37025.1.S1_at11/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.12358.1.S1_at2/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18590Os.7592.1.S1_at11/113+10379825..10383326malonyl CoA-acyl carrier protein transacylase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11237.1.S1_at--993--8771Chr03:10371257..10371281 (25 bp)
TGTTCCCGCGGGAGGCGACCAACTA
LOC_Os03g18560
Os.11237.1.S1_at--774--10491Chr03:10371024..10371048 (25 bp)
TTCACCGCCGGCATCAGGAAGTCGC
LOC_Os03g18560
Os.11237.1.S1_at--1109--411Chr03:10370964..10370988 (25 bp)
ATCATCGTCGAGGAGTTCTAGCATC
LOC_Os03g18560
Os.11237.1.S1_at--226--991Chr03:10370954..10370978 (25 bp)
AGGAGTTCTAGCATCGCGCGTGCGC
LOC_Os03g18560
Os.11237.1.S1_at--634--4411Chr03:10370928..10370952 (25 bp)
GCCAGCCACGATCGATCAGAGGAAA
LOC_Os03g18560
Os.11237.1.S1_at--808--311Chr03:10370898..10370922 (25 bp)
ATACGTGCTTGTACGATTAGTGTTC
LOC_Os03g18560
Os.11237.1.S1_at--379--3131Chr03:10370864..10370888 (25 bp)
AATTTACCGCGAATGACCTTTGTGA
LOC_Os03g18560
Os.11237.1.S1_at--774--8991Chr03:10370771..10370795 (25 bp)
TGAAGAACTACTGGTCTACTACTGC
LOC_Os03g18560
Os.11237.1.S1_at--970--1971Chr03:10370751..10370775 (25 bp)
ACTGCAGCCAGTTTTCTTTATGGTG
LOC_Os03g18560
Os.11237.1.S1_at--669--10091Chr03:10370733..10370757 (25 bp)
TATGGTGTTCGATTTCAGTTACGGA
LOC_Os03g18560
Os.11237.1.S1_at--1076--5291Chr03:10370700..10370725 (25 bp)
GAAGGTACGCATACGAGGAACCAAA
NONE
Target Sequence 
TGTTCCCGCGGGAGGCGACCAACTACGAGTTCTCGCCGGAGACGCGGCGGCTGACGGTGCACATCCCGGCGGCGTGCGAG
GTCGGCTACAGGGACGGCTCCGTGCTGCGGTTCGACGCCACGGTGTGCGGGACGCTGGAGAAGGGGAGGCTGGCGGAGGT
GGAGGGGCTCAAGACCAAGGTGCTCGTNTGGGCCAGGGTCACCGCCGTCAGGGCCGACGCCGCCAAGGTGCACTTCACCG
CCGGCATCAGGAAGTCGCGCAGCCGTGACGCCTACGAGGTCGTCAGGGGCGGCATCATCGTCGAGGAGTTCTAGCATCGC
GCGTGCGCCGCCAGCCACGATCGATCAGAGGAAATAATAATACGTGCTTGTACGATTAGTGTTCGGGATGGGTAATTTAC
CGCGAATGACCTTTGTGATTATAACTGATTATTAGTAATTATAAAAGCTGGATGTCCATGATAAAGGGTAGATACTTGAG
ATGCTGTGAAGAACTACTGGTCTACTACTGCAGCCAGTTTTCTTTATGGTGTTCGATTTCAGTTACGGAGTTATAAGAAG
GTACGCATACGAGGAACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis