Browse Element(s) Details


Os.37025.1.S1_at

Description gb:AK061276.1
DB_XREF= gi:32971294
TID=Os.37025.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E11, full insert sequence.
FL= gb:AK061276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1858011/1140S ribosomal protein S7, putative, expressed
LOC_Os03g185701/1140S ribosomal protein S7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein
LOC_Os03g18550Os.15618.1.S1_a_at11/113+10367022..10369954Mitochondrial carrier protein, expressed
LOC_Os03g18560Os.11237.1.S1_at10/113+10370703..10371797expressed protein
LOC_Os03g18570Os.12358.1.S1_at11/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18570Os.37025.1.S1_at1/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.37025.1.S1_at11/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.12358.1.S1_at2/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18590Os.7592.1.S1_at11/113+10379825..10383326malonyl CoA-acyl carrier protein transacylase containing protein, expressed
LOC_Os03g18600Os.55612.1.S1_at9/113+10397692..10398864Streptomyces cyclase/dehydrase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37025.1.S1_at--941--571Chr03:10378852..10378876 (25 bp)
ATGCCAAAGTTGGTCTTCGGTATTT
LOC_Os03g18580
Os.37025.1.S1_at--903--7811Chr03:10378863..10378887 (25 bp)
GGTCTTCGGTATTTGTTACTTGGAG
LOC_Os03g18580
Os.37025.1.S1_at--536--8051Chr03:10378884..10378908 (25 bp)
GGAGATGGCAAATCGACTTGAGCAA
LOC_Os03g18580
Os.37025.1.S1_at--208--3692Chr03:10378940..10378964 (25 bp)
CTTTGCTTGGCACGGTTAGCTTGTT
LOC_Os03g18580
Os.37025.1.S1_at--198--7871Chr03:10378953..10378977 (25 bp)
GGTTAGCTTGTTTCAAATCCGTTGT
LOC_Os03g18580
Os.37025.1.S1_at--366--10491Chr03:10378964..10378988 (25 bp)
TTCAAATCCGTTGTTTGTTGTGGAA
LOC_Os03g18580
Os.37025.1.S1_at--34--3071Chr03:10379016..10379040 (25 bp)
AATCTCATTATGGTTCGCTGTTTCA
LOC_Os03g18580
Os.37025.1.S1_at--987--10431Chr03:10379023..10379047 (25 bp)
TTATGGTTCGCTGTTTCATTCTCTT
LOC_Os03g18580
Os.37025.1.S1_at--397--10311Chr03:10379036..10379060 (25 bp)
TTTCATTCTCTTGCGTTTATCACCC
LOC_Os03g18580
Os.37025.1.S1_at--271--10351Chr03:10379051..10379075 (25 bp)
TTTATCACCCGCTGTCTGCTAACTT
LOC_Os03g18580
Os.37025.1.S1_at--311--4731Chr03:10379061..10379085 (25 bp)
GCTGTCTGCTAACTTAGGGTGTGTT
LOC_Os03g18580
Target Sequence 
ATGCCAAAGTTGGTCTTCGGTATTTGTTACTTGGAGATGGCAAATCGACTTGAGCAATGTTAAAGTTTTGGGCATTTAAA
TTATAGACCTTTGCTTGGCACGGTTAGCTTGTTTCAAATCCGTTGTTTGTTGTGGAATGTGTTTCACATATGTGGTAGGT
GAAGAATCTCATTATGGTTCGCTGTTTCATTCTCTTGCGTTTATCACCCGCTGTCTGCTAACTTAGGGTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis