Browse Element(s) Details


Os.55612.1.S1_at

Description gb:AK108414.1
DB_XREF= gi:32993623
TID=Os.55612.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H05, full insert sequence.
FL= gb:AK108414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g186009/11Streptomyces cyclase/dehydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18570Os.12358.1.S1_at11/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18570Os.37025.1.S1_at1/113+10372685..1037486040S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.37025.1.S1_at11/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18580Os.12358.1.S1_at2/113+10376940..1037921540S ribosomal protein S7, putative, expressed
LOC_Os03g18590Os.7592.1.S1_at11/113+10379825..10383326malonyl CoA-acyl carrier protein transacylase containing protein, expressed
LOC_Os03g18600Os.55612.1.S1_at9/113+10397692..10398864Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g18620Os.50226.1.S1_at11/113+10407958..10412760pentatricopeptide, putative, expressed
LOC_Os03g18630Os.49177.1.S1_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18630OsAffx.12923.1.S1_x_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18640OsAffx.12924.1.S1_at11/113+10422283..10425052Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55612.1.S1_at--829--831Chr03:10398011..10398035 (25 bp)
ATGGATGTGTGTTTCTTCGGCGCGT
LOC_Os03g18600
Os.55612.1.S1_at--636--10611Chr03:10397996..10398020 (25 bp)
TTCGGCGCGTGAGAGCTTTCTCCTT
LOC_Os03g18600
Os.55612.1.S1_at--862--10351NONE
TTTTTCCCCTCTGGTTTCTTCACAT
NONE
Os.55612.1.S1_at--609--10371Chr03:10397908..10397932 (25 bp)
TTTTTTCCCTCGTTGTTGCGAGAGA
LOC_Os03g18600
Os.55612.1.S1_at--1047--3511Chr03:10397872..10397896 (25 bp)
CATCCACCCTTGTCCAAAAAGATTC
LOC_Os03g18600
Os.55612.1.S1_at--282--5671Chr03:10397840..10397864 (25 bp)
GACATGTATAATTGACAGCCTGCAA
LOC_Os03g18600
Os.55612.1.S1_at--25--5651Chr03:10397827..10397851 (25 bp)
GACAGCCTGCAATTCCATTTGTATG
LOC_Os03g18600
Os.55612.1.S1_at--851--6891Chr03:10397807..10397831 (25 bp)
GTATGCTCGAGTTGGTTGGTGTATT
LOC_Os03g18600
Os.55612.1.S1_at--1031--171Chr03:10397738..10397762 (25 bp)
ATTTAGATCTGTTCTCTGGCACAAA
LOC_Os03g18600
Os.55612.1.S1_at--1047--8731Chr03:10397706..10397730 (25 bp)
TGTACGTTCGTATTTAAAGTTGTGC
LOC_Os03g18600
Os.55612.1.S1_at--21--9851Chr03:10397692..10397716 (25 bp)
TAAAGTTGTGCTACATCTATACAGC
NONE
Target Sequence 
ATGGATGTGTGTTTCTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCCCTCTGGTTTCTTCACATTTGAC
CCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACCATCCACCCTTGTCCAAAAAG
ATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACA
TACATATACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGTATTT
AAAGTTGTGCTACATCTATACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis