Browse Element(s) Details


Os.4609.1.S1_a_at

Description gb:AK069511.1
DB_XREF= gi:32979535
TID=Os.4609.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative steroid membrane binding protein (OSJNBb0073N24.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019P08, full insert sequence.
FL= gb:AK069511.1 gb:AK105774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3587011/11Membrane steroid binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35800Os.16692.2.S1_at11/1110+18816916..18818979expressed protein
LOC_Os10g35800OsAffx.26828.1.S1_x_at1/1110+18816916..18818979expressed protein
LOC_Os10g35810OsAffx.18528.1.S1_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35810Os.16692.1.S1_x_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35820Os.7563.1.S1_at11/1110+18822696..18823361expressed protein
LOC_Os10g35830OsAffx.30680.1.S1_at11/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.1.S1_x_at10/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.2.S1_at9/1110+18824973..18826935hypothetical protein
LOC_Os10g35840Os.11129.1.S1_at11/1110+18829486..18832897Glutamyl-tRNA reductase, chloroplast precursor, putative, expressed
LOC_Os10g35850Os.4688.1.S1_at11/1110+18836717..18839202Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os10g35870Os.4609.1.S1_a_at11/1110+18842149..18844448Membrane steroid binding protein 1, putative, expressed
LOC_Os10g35880NANA10+18847579..18853656hypothetical protein
LOC_Os10g35890NANA10+18853990..18858417hypothetical protein
LOC_Os10g35920Os.2599.1.S1_at11/1110+18860513..18864841F-box domain containing protein, expressed
LOC_Os10g35930Os.2601.1.S1_at11/1110+18869138..18871109LIM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0030308biological_processnegative regulation of cell growth
GO:0005886cellular_componentplasma membrane
GO:0005496molecular_functionsteroid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4609.1.S1_a_at--64--5831Chr10:18842707..18842731 (25 bp)
GACCTGGTGGACCTTATGCGCTATT
LOC_Os10g35870
Os.4609.1.S1_a_at--853--9151Chr10:18842691..18842715 (25 bp)
TGCGCTATTCGCTGGCAAAGATGCC
LOC_Os10g35870
Os.4609.1.S1_a_at--278--1371Chr10:18842663..18842687 (25 bp)
AGAGCACTCGCTAAGATGTCCTTCG
LOC_Os10g35870
Os.4609.1.S1_a_at--1148--9351Chr10:18842641..18842665 (25 bp)
TCGAGCCCCAGGATTTGACCGGTGA
LOC_Os10g35870
Os.4609.1.S1_a_at--1069--7931Chr10:18842631..18842655 (25 bp)
GGATTTGACCGGTGACATCTCTGGT
LOC_Os10g35870
Os.4609.1.S1_a_at--81--211Chr10:18842598..18842622 (25 bp)
ATTTGAACTCGACGCATTGCAGGAC
LOC_Os10g35870
Os.4609.1.S1_a_at--170--7091Chr10:18842531..18842555 (25 bp)
GTCAAGAAGACCGTCCCTGTTGAAG
LOC_Os10g35870
Os.4609.1.S1_a_at--427--8811Chr10:18842514..18842538 (25 bp)
TGTTGAAGATGGTGCCCCAAGCACT
LOC_Os10g35870
Os.4609.1.S1_a_at--104--1431Chr10:18842484..18842508 (25 bp)
AGAAACAACTGAAACCGCCGCTGCC
LOC_Os10g35870
Os.4609.1.S1_a_at--240--1471Chr10:18842449..18842473 (25 bp)
AGAAGGCGCCAGCAACCGAAGAGAA
LOC_Os10g35870
Os.4609.1.S1_a_at--293--1431Chr10:18842394..18842418 (25 bp)
AGAAAAGGAGGATGCTGTTGCCGCT
LOC_Os10g35870
Target Sequence 
GACCTGGTGGACCTTATGCGCTATTCGCTGGCAAAGATGCCAGCAGAGCACTCGCTAAGATGTCCTTCGAGCCCCAGGAT
TTGACCGGTGACATCTCTGGTCTTGGCCCATTTGAACTCGACGCATTGCAGGACTGGGAGTACAAGTTTATGGGCAAGTA
CGTGAAGGTCGGTACCGTCAAGAAGACCGTCCCTGTTGAAGATGGTGCCCCAAGCACTTCACCAGAAACAACTGAAACCG
CCGCTGCCGCTGAGCCAGAGAAGGCGCCAGCAACCGAAGAGAAGCCGAGGGAGGTAAGCTCGGAGGAAGTAAAAGAAAAG
GAGGATGCTGTTGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4609.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis