Browse Element(s) Details


Os.7563.1.S1_at

Description gb:AK063028.1
DB_XREF= gi:32973046
TID=Os.7563.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0078O01.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C01, full insert sequence.
FL= gb:AK063028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3582011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein
LOC_Os10g35780OsAffx.18527.1.S1_at10/1110+18805819..18806873hypothetical protein
LOC_Os10g35790Os.46127.1.S1_x_at2/1110+18812615..18813979Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35800Os.16692.2.S1_at11/1110+18816916..18818979expressed protein
LOC_Os10g35800OsAffx.26828.1.S1_x_at1/1110+18816916..18818979expressed protein
LOC_Os10g35810OsAffx.18528.1.S1_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35810Os.16692.1.S1_x_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35820Os.7563.1.S1_at11/1110+18822696..18823361expressed protein
LOC_Os10g35830OsAffx.30680.1.S1_at11/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.1.S1_x_at10/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.2.S1_at9/1110+18824973..18826935hypothetical protein
LOC_Os10g35840Os.11129.1.S1_at11/1110+18829486..18832897Glutamyl-tRNA reductase, chloroplast precursor, putative, expressed
LOC_Os10g35850Os.4688.1.S1_at11/1110+18836717..18839202Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os10g35870Os.4609.1.S1_a_at11/1110+18842149..18844448Membrane steroid binding protein 1, putative, expressed
LOC_Os10g35880NANA10+18847579..18853656hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7563.1.S1_at--1027--3931Chr10:18822845..18822869 (25 bp)
CGGCGGCATCCTGTCGTACGAGAAG
LOC_Os10g35820
Os.7563.1.S1_at--940--3811Chr10:18823073..18823097 (25 bp)
CTCCTTCGCCAAGATGTGATCTCAT
LOC_Os10g35820
Os.7563.1.S1_at--889--3771Chr10:18823111..18823135 (25 bp)
CTCTGATCCGCTTCTTGATTAGTTT
LOC_Os10g35820
Os.7563.1.S1_at--829--10051Chr10:18823130..18823154 (25 bp)
TAGTTTCTGCGTGTTCGTGTGATCT
LOC_Os10g35820
Os.7563.1.S1_at--21--491Chr10:18823151..18823175 (25 bp)
ATCTGTGGATGCGTGTGGTTCAATT
LOC_Os10g35820
Os.7563.1.S1_at--34--6771Chr10:18823168..18823192 (25 bp)
GTTCAATTGGCGTTCTTTCGGTGGG
LOC_Os10g35820
Os.7563.1.S1_at--461--2751Chr10:18823201..18823225 (25 bp)
AAGAAACCATCGTCCCTGCATTGTG
LOC_Os10g35820
Os.7563.1.S1_at--220--9071Chr10:18823217..18823241 (25 bp)
TGCATTGTGCGGTGTGTTTGTGTTC
LOC_Os10g35820
Os.7563.1.S1_at--1121--7451Chr10:18823249..18823273 (25 bp)
GTGTGACTCGAATAGCTTATGGATT
LOC_Os10g35820
Os.7563.1.S1_at--860--7891Chr10:18823305..18823329 (25 bp)
GGTTCATCTGTTCTGTACCTGATTC
LOC_Os10g35820
Os.7563.1.S1_at--108--6991Chr10:18823319..18823343 (25 bp)
GTACCTGATTCCTGATTTGGTCGTA
LOC_Os10g35820
Target Sequence 
CGGCGGCATCCTGTCGTACGAGAAGCTGGAGGGGTACGCGATCTGGGTCGGGGCCAGCGTGGCGTCGGCCTTCTTCGCGT
CCATGGAGAGCTGCTCCTGCATCCACGTCCACACCGCCGACGACGAGGGCGACGACTACGACCCCGAGGAGGCCAAGGAC
CGCCCCCTCATGCTCTCCCGCCCCCAGGCCCTCCCCGAGTACTACTACGACCGATCCGCCTCCTCCGCCTCCTTCGCCAA
GATGTGATCTCATCTGCTGCTCCCTTCTCTGATCCGCTTCTTGATTAGTTTCTGCGTGTTCGTGTGATCTGTGGATGCGT
GTGGTTCAATTGGCGTTCTTTCGGTGGGGGGCATTCAAGAAACCATCGTCCCTGCATTGTGCGGTGTGTTTGTGTTCATA
AAGTGTGTGACTCGAATAGCTTATGGATTTGTGATTGTAATTCTCTTGAGTTTTTTTTTTNNGGTTCATCTGTTCTGTAC
CTGATTCCTGATTTGGTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis