Browse Element(s) Details


Os.7675.1.S1_at

Description gb:AK058495.1
DB_XREF= gi:32968513
TID=Os.7675.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0078O01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E10, full insert sequence.
FL= gb:AK058495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3577011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein
LOC_Os10g35740OsAffx.6879.1.S1_at11/1110+18778654..18778955hypothetical protein
LOC_Os10g35750Os.25231.1.S1_x_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.25231.1.S1_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.15944.2.S1_x_at2/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35760Os.46648.1.S1_at11/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35760Os.15944.2.S1_x_at1/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein
LOC_Os10g35780OsAffx.18527.1.S1_at10/1110+18805819..18806873hypothetical protein
LOC_Os10g35790Os.46127.1.S1_x_at2/1110+18812615..18813979Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35800Os.16692.2.S1_at11/1110+18816916..18818979expressed protein
LOC_Os10g35800OsAffx.26828.1.S1_x_at1/1110+18816916..18818979expressed protein
LOC_Os10g35810OsAffx.18528.1.S1_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35810Os.16692.1.S1_x_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35820Os.7563.1.S1_at11/1110+18822696..18823361expressed protein
LOC_Os10g35830OsAffx.30680.1.S1_at11/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.1.S1_x_at10/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.2.S1_at9/1110+18824973..18826935hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7675.1.S1_at--414--10551Chr10:18803312..18803336 (25 bp)
TTCTTCCTCCGGACCAAGAAGGAGC
LOC_Os10g35770
Os.7675.1.S1_at--52--2731Chr10:18803327..18803351 (25 bp)
AAGAAGGAGCCCTCCTTCGAGGGCT
LOC_Os10g35770
Os.7675.1.S1_at--1074--9371Chr10:18803343..18803367 (25 bp)
TCGAGGGCTTCTTCGAGAGCCGGTT
LOC_Os10g35770
Os.7675.1.S1_at--199--10631Chr10:18803503..18803527 (25 bp)
TTCGACGCAGGAGAGCCATTGCCAT
LOC_Os10g35770
Os.7675.1.S1_at--661--971Chr10:18803511..18803535 (25 bp)
AGGAGAGCCATTGCCATTCTTACTG
LOC_Os10g35770
Os.7675.1.S1_at--798--9191Chr10:18803522..18803546 (25 bp)
TGCCATTCTTACTGCCATTGCCAAT
LOC_Os10g35770
Os.7675.1.S1_at--968--10591Chr10:18803630..18803654 (25 bp)
TTCTGATGTGCGGATGATGCGATGC
LOC_Os10g35770
Os.7675.1.S1_at--276--9051Chr10:18803752..18803776 (25 bp)
TGCAGATGACTGAAAGCCACCACTA
LOC_Os10g35770
Os.7675.1.S1_at--976--5551Chr10:18803763..18803787 (25 bp)
GAAAGCCACCACTAGTAGACTTCAT
LOC_Os10g35770
Os.7675.1.S1_at--86--10031Chr10:18803778..18803802 (25 bp)
TAGACTTCATTTTAGGTTGTACAAA
LOC_Os10g35770
Os.7675.1.S1_at--869--4591Chr10:18803810..18803834 (25 bp)
GCGAAAAACATATTGCTCCAGCAAA
LOC_Os10g35770
Target Sequence 
TTCTTCCTCCGGACCAAGAAGGAGCCCTCCTTCGAGGGCTTCTTCGAGAGCCGGTTNGCGGCGAAGCAGAAGCGGTTGAT
GCACGCCCGGGATTTCGATCTCCGCCGGTATGACGAGCTCCGGCGAGCCTGTGGCCTGCCGGTGGTTCGGACTCCGACGA
GCCCCTGCAGACCGTCGTCGTCGTCGTCGTCTTCGACGCAGGAGAGCCATTGCCATTCTTACTGCCATTGCCAATGATCT
TTGTGCTGTTCTGTTCTNTTGTCAGAATTTTTTTCATGCCCAGTTTATGGGGGTTAAGCTAGCTTCTCCATTGTANCGTT
CTGATGTGCGGATGATGCGATGCAAAGCATAGTTTGTTGAAGAGATGACAAGGCAGATTTTAGCTTGAAAANNTGGAGGT
GAGAAAAAAAAATCCTGATGTGTGTGTGTGTGANAGTGATTGCAGATGACTGAAAGCCACCACTAGTAGACTTCATTTTA
GGTTGTACAAATTTGACAGCGAAAAACATATTGCTCCAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis