Browse Element(s) Details


OsAffx.6879.1.S1_at

Description tigr:9638.m03170
TID=OsAffx.6879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3574011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein
LOC_Os10g35740OsAffx.6879.1.S1_at11/1110+18778654..18778955hypothetical protein
LOC_Os10g35750Os.25231.1.S1_x_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.25231.1.S1_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.15944.2.S1_x_at2/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35760Os.46648.1.S1_at11/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35760Os.15944.2.S1_x_at1/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6879.1.S1_at--1042--8432Chr10:18778689..18778713 (25 bp)
GGCCAACGTCGTGCCAGTGACAGCG
LOC_Os10g35740
OsAffx.6879.1.S1_at--38--3471Chr10:18778703..18778727 (25 bp)
CAGTGACAGCGTGGGCCATCGTGTT
LOC_Os10g35740
OsAffx.6879.1.S1_at--233--4331Chr10:18778718..18778742 (25 bp)
CCATCGTGTTTTGGGCAGTCGCCGG
LOC_Os10g35740
OsAffx.6879.1.S1_at--744--4491Chr10:18778738..18778762 (25 bp)
GCCGGTGATGCAGTGGCCGCGGTCA
LOC_Os10g35740
OsAffx.6879.1.S1_at--817--4671Chr10:18778756..18778780 (25 bp)
GCGGTCAGCGCCGTTAAAGCTGCAG
LOC_Os10g35740
OsAffx.6879.1.S1_at--976--1651Chr10:18778762..18778786 (25 bp)
AGCGCCGTTAAAGCTGCAGCCCATG
LOC_Os10g35740
OsAffx.6879.1.S1_at--242--4011Chr10:18778767..18778791 (25 bp)
CGTTAAAGCTGCAGCCCATGCTCCG
LOC_Os10g35740
OsAffx.6879.1.S1_at--1135--8551Chr10:18778801..18778825 (25 bp)
TGGATCCGGGAGAATCTAGCCGCTA
LOC_Os10g35740
OsAffx.6879.1.S1_at--431--3051Chr10:18778813..18778837 (25 bp)
AATCTAGCCGCTAGGATTCCTATGG
LOC_Os10g35740
OsAffx.6879.1.S1_at--507--10092Chr10:18778824..18778848 (25 bp)
TAGGATTCCTATGGTGACCTTGGCT
LOC_Os10g35740
OsAffx.6879.1.S1_at--3--5851Chr10:18778839..18778863 (25 bp)
GACCTTGGCTGTGTTCGAGGGAGAA
LOC_Os10g35740
Target Sequence 
GGCCAACGTCGTGCCAGTGACAGCGTGGGCCATCGTGTTTTGGGCAGTCGCCGGTGATGCAGTGGCCGCGGTCAGCGCCG
TTAAAGCTGCAGCCCATGCTCCGCCGCCGTTTTGGATCCGGGAGAATCTAGCCGCTAGGATTCCTATGGTGACCTTGGCT
GTGTTCGAGGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis