Browse Element(s) Details


Os.5981.1.S1_at

Description gb:AK101839.1
DB_XREF= gi:32987048
TID=Os.5981.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein (OSJNBa0078O01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069D17, full insert sequence.
FL= gb:AK101839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3569011/11ribosomal protein S18 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein
LOC_Os10g35740OsAffx.6879.1.S1_at11/1110+18778654..18778955hypothetical protein
LOC_Os10g35750Os.25231.1.S1_x_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.25231.1.S1_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.15944.2.S1_x_at2/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35760Os.46648.1.S1_at11/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35760Os.15944.2.S1_x_at1/1110+18782630..18784562pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5981.1.S1_at--456--6011Chr10:18757523..18757547 (25 bp)
GAGAGATTAAAACCGCCCGTGCATT
LOC_Os10g35690
Os.5981.1.S1_at--682--10671Chr10:18757555..18757579 (25 bp)
TTGCCTTTCACAACAATGGGCCAAA
LOC_Os10g35690
Os.5981.1.S1_at--841--1391Chr10:18757680..18757704 (25 bp)
AGACGACGCTGTGCCTGATGAGGAC
LOC_Os10g35690
Os.5981.1.S1_at--232--9491Chr10:18757764..18757788 (25 bp)
TCTGCATTTCTTCTGTTACTCATTC
LOC_Os10g35690
Os.5981.1.S1_at--506--10471Chr10:18757779..18757803 (25 bp)
TTACTCATTCGACACGGTTCCACAT
LOC_Os10g35690
Os.5981.1.S1_at--849--8831Chr10:18757815..18757839 (25 bp)
TGATAGTCATCTACTCTTGCCCGGA
LOC_Os10g35690
Os.5981.1.S1_at--97--9171Chr10:18757832..18757856 (25 bp)
TGCCCGGATCATAGCCCAGGTTCAA
LOC_Os10g35690
Os.5981.1.S1_at--745--10171Chr10:18757888..18757912 (25 bp)
TATAATCTCGGTTTCTGGTTTTGCT
LOC_Os10g35690
Os.5981.1.S1_at--967--3111Chr10:18757933..18757957 (25 bp)
AATTTTTGGCTTGCTAGTCTCCAGG
LOC_Os10g35690
Os.5981.1.S1_at--759--7291Chr10:18757969..18757993 (25 bp)
GTGCCCCACCTAACATTAACATGAA
LOC_Os10g35690
Os.5981.1.S1_at--1052--6351Chr10:18757997..18758021 (25 bp)
GATCCAGACGAGATCCAGTCCTTAA
LOC_Os10g35690
Target Sequence 
GAGAGATTAAAACCGCCCGTGCATTGGGGCTATTGCCTTTCACAACAATGGGCCAAAGACCATTCATTTATGGCAGATCT
GTGGAGGTGAATCTTTCAGAGGAGGAATATGGTTACGACTTTGTAGATCGGAGGGCAGGTGAGCCTGATGAGAATGCAGA
CGACGCTGTGCCTGATGAGGACGTTGCGCCTGGTGTGGAGAATGCATAAGCATTTTTCAAGGGCTTGCCATTCTGCAATG
CTCTGCATTTCTTCTGTTACTCATTCGACACGGTTCCACATGCCTTCCTGCCTGATAGTCATCTACTCTTGCCCGGATCA
TAGCCCAGGTTCAATAAATTGTAGTATTTCGCATGTTATGTACACTATAATCTCGGTTTCTGGTTTTGCTTGTTGTGACA
TGATCAGCAAAATTTTTGGCTTGCTAGTCTCCAGGTTGGAGATCATGTGCCCCACCTAACATTAACATGAAAATGATCCA
GACGAGATCCAGTCCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis